Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18889 163 5e-35 seq20084 109 1e-18 >seq18889 Length=1054283 Score = 163 bits (180), Expect = 5e-35 Identities = 332/490 (68%), Gaps = 5/490 (1%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| |||||| ||||| || || || ||| | ||||||| | ||||| || || | Sbjct 964622 GGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAA 964681 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||||| |||||||| |||| | | || ||| ||| | || || || || Sbjct 964682 GTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTT 964741 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| | ||| | || || || || ||||| | | | || | ||| | | Sbjct 964742 GTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTG 964801 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || | ||| || ||| ||| |||||| || |||||| | || || ||| Sbjct 964802 -CTGAGCCTTGACCACCCGCTTCACTCTACCCTC---CTGTTCATATCGTGTGTACAGCT 964857 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | ||||||| || || | ||| |||| || || ||| ||||||||||| | Sbjct 964858 TCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACATCAAAG 964917 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| || ||||| || || |||| |||||| ||||| |||||||| || || | | Sbjct 964918 ACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGA 964977 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| |||| | || ||||||||| || |||| ||| |||| || | ||| |||| Sbjct 964978 AGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAA 965037 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| |||||| ||||||| || | ||| | || || ||||| || ||||||| Sbjct 965038 ACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCAC 965097 Query 222192 CCTGATCCAC 222201 | || ||||| Sbjct 965098 CTTGGTCCAC 965107 >seq20084 Length=15297 Score = 109 bits (120), Expect = 1e-18 Identities = 110/138 (80%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||||||||||||||| ||||| ||| || ||||| || Sbjct 12836 GGGGAGCGTGTGGTGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCC 12777 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGC 25990 ||||| |||||||| ||| | | | || | |||||||| ||| ||||| |||||||| | Sbjct 12776 GCCATTTTCTGGCTGAAG-AAACGAGGCCTGATGCCCGGACTG-ACTTTCTCCAACGAAC 12719 Query 25991 TCATCAGCAGGGACGAGG 26008 | |||||| | ||||||| Sbjct 12718 TTATCAGCCGCGACGAGG 12701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928542228806400