Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3171 183 2e-40 seq1110 105 4e-17 seq24987 100 2e-15 seq4874 100 2e-15 seq10742 91.5 1e-12 seq12926 89.7 3e-12 >seq3171 Length=1257762 Score = 183 bits (202), Expect = 2e-40 Identities = 371/546 (68%), Gaps = 6/546 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| ||||| | || || || ||| || || | ||| | || |||| ||||| Sbjct 1255635 ATTGGCATTGACCTGGGCACCACCTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAAGTG 1255576 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| || ||| | || || || |||||| | || ||||| Sbjct 1255575 GAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGTTATGTTGCCTTCACTGAC 1255516 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | | ||||| || || || ||| | || | || || || |||| || Sbjct 1255515 ACAGAGCGGTTAATTGGTGACGCAGCCAAAAACCAGGTGGCCATGAACCCGATTAACACC 1255456 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || |||||||| || ||| | || || | || |||||||| | ||| ||| |||| Sbjct 1255455 ATCTTTGATGCCAAGAGACTCATAGGGAGAAAATTTGATGACCATATTGTGCAAGCTGAC 1255396 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| | ||||||||| || || || | || |||| || || | |||||| | Sbjct 1255395 ATGAAGCTTTGGCCTTTCAAAGTCATCAGTGACAGTGGCAAGCCCAAAGTAGAAGTGGAG 1255336 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 |||| |||||| || || |||| || ||| |||| || ||||||||||| | | Sbjct 1255335 TACAA--AGGTGAGACAAAGGCGTTTTATCCAGAAGAAATCTCATCAATGGTTTTGGTTA 1255278 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | ||||| ||| || ||| | ||| | || || ||| | ||||||| || || Sbjct 1255277 AGATGAAGGAAATTGCAGAG-GCGTATTTGGGGCAGAGAGTGTCCAATGCAGTCATCACA 1255219 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || || || || || ||||| || |||||||| ||| ||| | Sbjct 1255218 GTCCCTGCTTATTTCAACGACTCCCAGCGCCAAGCCACAAAAGATGCCGGAGTTATTTCT 1255159 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||||| | | || || ||||||||||| |||||||| |||| |||||| | Sbjct 1255158 GGCCTGAATGTGCTGAGAATCATCAATGAACCAACCGCAGCCGCTATTGCATATGGTTTA 1255099 Query 474869 GATAAG 474874 || ||| Sbjct 1255098 GACAAG 1255093 Score = 178 bits (196), Expect = 8e-39 Identities = 567/870 (65%), Gaps = 12/870 (1%) Strand=Plus/Minus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 || ||| ||||||| | | || || | ||||||||| |||| |||| ||| ||| Sbjct 1255047 GGCACTTTTGACGTATCCATCCTGACAATTGAAGATGGTATTTTTGAGGTAAAAGCCACA 1254988 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGTGTG 475427 || || || |||| | || || ||||| ||||| ||| | | || | || | || Sbjct 1254987 GCCGGTGACACACACTTGGGCGGAGAAGACTTTGACAATCGTATGGTGAAGCAC--TTTG 1254930 Query 475428 TTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTT--CAACATCTGCTAAAGCATTAAG 475485 |||| || || ||||| || | || || || ||| || | | |||| | || Sbjct 1254929 TTGATGAGTTTAAGAGAAAGCACAAGAAAGACATTAGCCAAAATAAG--AGAGCAGTGAG 1254872 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTAC 475545 | || |||| || |||||||| || ||| | | || || || || ||| | | Sbjct 1254871 GAGGCTGCGAACGGCATGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAG 1254812 Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605 | ||| |||| ||||| | |||||||||||| | | | || || || | |||| Sbjct 1254811 CATCGAAATTGACTCTCTATATGAAGGAATTGACTTTTACACCTCAATCACTCGTGCTAG 1254752 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 ||||||||| | || || ||||| || |||| | || || ||||| ||| | | Sbjct 1254751 ATTTGAAGAACTCAACTCAGACCTCTTCAGGGGAACACTAGACCCAGTTGAGAAAGCTTT 1254692 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 ||| | || || ||||| || |||| || | || || || || || || || || | Sbjct 1254691 ACAAGACGCCAAGCTGGACAAGTC-CAAGATCAACGACATCGTCCTGGTTGGTGGATCCA 1254633 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAAT 475783 | |||||||| ||||| | || | || || | | |||||||| | |||| || Sbjct 1254632 CGAGAATTCCTAAAATCCAAAAACTACTG-CAGGACTTCTTTAATGGAAGGGAGTTGAAC 1254574 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| | || || |||||||| || || ||||||||||| || || || ||||| | Sbjct 1254573 AAAAGCATCAACCCAGATGAAGCAGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTG 1254514 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA 475903 || | | ||||| | | | | | | | || || ||||||| || Sbjct 1254513 ATGGGGGACACCTCGGAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTCT 1254454 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 || || ||||||||| ||||| | ||||| | || | | || || | ||| Sbjct 1254453 TTGGGCATTGAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCATC 1254394 Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023 || |||| || | || | || ||||| || || ||||| || || ||| |||| Sbjct 1254393 CCCACCAAACAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCATC 1254334 Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083 || | |||||||||||||| | |||||||| || ||| || || | ||| | Sbjct 1254333 CAGGTGTTTGAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTCGGCAAATTTGAC 1254274 Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 || || || || || || || |||||||| || || |||||||| || || || ||| Sbjct 1254273 CTGACGGGGATCCCACCAGCCCCAAGAGGAGTCCCGCAGATTGAAGTAACATTCGACATT 1254214 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||| || || ||||| ||||| Sbjct 1254213 GATGCGAATGGCATCCTCAATGTCTCTGCT 1254184 >seq1110 Length=1300725 Score = 105 bits (116), Expect = 4e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || || || || ||||| || || || || ||||| ||||||| Sbjct 26315 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCAACCAAAGATG 26374 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || |||||||| | ||||| || ||||||||||||||||| || Sbjct 26375 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 26434 Query 474855 TTGCTTATGGTCTTG 474869 |||| ||||| |||| Sbjct 26435 TTGCCTATGG-CTTG 26448 Score = 96.9 bits (106), Expect = 2e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 |||||||| || |||| || |||| ||| | || ||||| || |||||||| ||| Sbjct 27456 ACTAAAGACAACAACATCCTGGGAAAGTTTGAGCTCACTGGTATCCCACCTGCTCCAAGA 27515 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 || || || || |||||||| || ||||| |||||||| |||||||||||||| || Sbjct 27516 GGTGTCCCCCAGATTGAAGTCACCTTTGACATTGATGCCAATGGTATTCTTAACGT 27571 >seq24987 Length=1398849 Score = 100 bits (110), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||| | | |||| || | ||||| ||||| || || ||||||||||| || || || | Sbjct 197122 AAGTGAATAATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGACAGGCTA 197181 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 | |||||||| ||| ||| |||||||||||| | | ||||| || || ||||||| Sbjct 197182 CAAAAGATGCAGGAGTCATTTGTGGTCTTAATGTTCTTTGCATTATCAACGAGCCAACAG 197241 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 | || || |||||||||| | || |||| Sbjct 197242 CTGCTGCTATTGCTTATGGCTTAGACAAGA 197271 >seq4874 Length=535125 Score = 100 bits (110), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || || | || || | | Sbjct 502020 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 501961 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||||||| || || |||||||| || || | || ||||| || ||||| || ||| Sbjct 501960 CCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCC 501901 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || ||||| ||||| ||| ||| |||||||| || || | ||||||||| Sbjct 501900 TTATCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTA 501841 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || ||||| || || || || || || Sbjct 501840 ATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTG 501806 >seq10742 Length=3397572 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | |||||| || ||||| ||||||||||| || | || Sbjct 2148953 TTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGC 2149012 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || |||||||| || || ||||| || || |||||| || ||| Sbjct 2149013 TGGTCAGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCA 2149072 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || ||| || || |||||||| || || |||||||| || || || Sbjct 2149073 CTCGGCTCAACTTCCAA-AGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTG 2149128 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | |||||| || ||||| ||||| ||||| || | || Sbjct 2148725 TTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGC 2148784 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| || || ||||||||||| || ||| ||| ||||| || ||| Sbjct 2148785 TGATCAGGAGGAATACCCTCTTTGTCTTGAATTTTGGCTTTCACATTCTCAATGGTGTCA 2148844 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | || || || || || || || |||||||| || || || Sbjct 2148845 CTTGGTTCAACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTG 2148900 >seq12926 Length=231 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 ||||| || ||||| || || || || ||||| || ||||||||||| || || ||| | Sbjct 229 ATTACAGTACCAGCTTACTTCAACGACTCTCAGCGCCAAGCAACTAAGGACGCCGGAGCA 170 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || ||||| || || || |||| ||||| || || || || || || || || ||||| Sbjct 169 ATCGCAGGACTAAACGTGCTACGAATTATAAACGAGCCCACCGCGGCTGCGCTCGCTTAC 110 Query 474863 GGTCTTGATAAGAA 474876 || || || ||||| Sbjct 109 GGACTCGACAAGAA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267061360156880