Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq21827 517 3e-142
>seq21827
Length=6214
Score = 517 bits (572), Expect = 3e-142
Identities = 712/989 (72%), Gaps = 10/989 (1%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| |||||| |||||||||||||| ||||| || ||||||||||| | || | |||
Sbjct 6014 AGCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAGTT 5955
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||||| | |||||||| ||| | || | ||| | | | |||||
Sbjct 5954 AGCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 5897
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||| ||||| | ||||||||||||||| || || | || ||
Sbjct 5896 -GATTGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGT 5838
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || ||||||||||| | |||||| |||| | | |||||
Sbjct 5837 GAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTT 5778
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
|| |||||||| |||||||| | || ||||| || |||||||| || || ||||| ||
Sbjct 5777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTA 5718
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|| ||||| ||||| || ||| | || || | || ||| ||| || || |||||
Sbjct 5717 GGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 5658
Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250
|| || | ||||| || | || ||||||||| ||||| | || |||||
Sbjct 5657 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 5598
Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310
||| || || || || | ||| || || || ||||||||||| ||||| || ||||||||
Sbjct 5597 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 5538
Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370
||| | |||||| ||||||||||| || || ||||||||||| ||||| || || ||
Sbjct 5537 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 5478
Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428
||| |||| ||||| | | ||||| || | || || ||||||| || || || |||||
Sbjct 5477 TTGACCAATTGGATAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATAT 5420
Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488
|||||| |||||| ||||||||||| || | ||||||||||||| | || |||||
Sbjct 5419 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 5360
Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548
||| || | || | | |||||| | ||||| || | ||| || || || || |||
Sbjct 5359 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 5300
Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608
||||| || || | || || |||||||| || ||||| || || | ||| || || |
Sbjct 5299 AACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCA 5240
Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668
|| | || | || || || || || || ||||||||||| |||| | ||| || |||
Sbjct 5239 GAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACA 5180
Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728
|| |||||||||||||| || || || ||||| ||||||| || || || | |||| |
Sbjct 5179 GGTTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA 5120
Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788
| || |||||| || | | ||||||||| | || |||||||| || | ||| || |||
Sbjct 5119 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 5060
Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817
|| | || || || | ||||| ||| ||
Sbjct 5059 TTTTCAGTGCTGGTTATCCAGTTACAGAA 5031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151271572629640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |