Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq21827 517 3e-142 >seq21827 Length=6214 Score = 517 bits (572), Expect = 3e-142 Identities = 712/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||||||||| ||||| || ||||||||||| | || | ||| Sbjct 6014 AGCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAGTT 5955 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 5954 AGCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 5897 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | ||||||||||||||| || || | || || Sbjct 5896 -GATTGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGT 5838 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| | |||||| |||| | | ||||| Sbjct 5837 GAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTT 5778 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || ||||| || Sbjct 5777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTA 5718 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 5717 GGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 5658 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 5657 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 5598 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || || ||||||||||| ||||| || |||||||| Sbjct 5597 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 5538 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||| ||||| || || || Sbjct 5537 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 5478 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| ||||| | | ||||| || | || || ||||||| || || || ||||| Sbjct 5477 TTGACCAATTGGATAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATAT 5420 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| ||||||||||| || | ||||||||||||| | || ||||| Sbjct 5419 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 5360 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | |||||| | ||||| || | ||| || || || || ||| Sbjct 5359 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 5300 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || || |||||||| || ||||| || || | ||| || || | Sbjct 5299 AACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCA 5240 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || || || || || ||||||||||| |||| | ||| || ||| Sbjct 5239 GAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACA 5180 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||| ||||||| || || || | |||| | Sbjct 5179 GGTTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA 5120 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 5119 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 5060 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||||| ||| || Sbjct 5059 TTTTCAGTGCTGGTTATCCAGTTACAGAA 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151271572629640