Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq21827 553 2e-152 seq25415 524 1e-143 >seq21827 Length=6214 Score = 553 bits (612), Expect = 2e-152 Identities = 699/963 (73%), Gaps = 8/963 (1%) Strand=Plus/Minus Query 103172 GCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGA 103231 ||||| || || || |||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 6016 GCAGCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAG 5957 Query 103232 CCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATG 103291 ||| ||||||| || || |||||||| || | |||||||| |||| ||||| | Sbjct 5956 TTAGCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA 5897 Query 103292 GACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTG 103351 || |||||||| ||||| || || | ||| || ||||| ||||||| ||| | || ||| Sbjct 5896 GATTGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGTG 5837 Query 103352 AACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTG 103411 ||||| ||||| ||||| || | ||||||||| Sbjct 5836 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTG 5777 Query 103412 AATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTAT 103471 || || |||||||||||||| || || || ||||||||||| |||||||| ||||| Sbjct 5776 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAG 5717 Query 103472 GTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCA 103531 || ||||||||||| ||||| ||||||| | || ||||||| |||| || || || Sbjct 5716 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 5657 Query 103532 C-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAA 103590 | || | | | || | || |||| ||||| |||||||||||||| || || || ||||| Sbjct 5656 CTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 5598 Query 103591 GACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAA 103650 || ||||| ||||| | |||||| || |||||||| || ||||| || || |||||||| Sbjct 5597 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 5538 Query 103651 GACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACC 103710 || | |||| ||||||| || || || || || | ||||||| | || || || || Sbjct 5537 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 5478 Query 103711 TTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGC 103770 |||||||| || |||| |||||| || || | ||||| ||||||||||| || ||||| Sbjct 5477 TTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 5418 Query 103771 GACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 ||| ||||| |||||||| ||||||||| | | |||||||||||| |||||||| Sbjct 5417 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 5358 Query 103831 TGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAG 103890 | | |||| | ||||| | || | || | |||||||||| || || | Sbjct 5357 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 5298 Query 103891 CCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGA 103950 ||| ||||||| || || |||||||| || || || || || | ||| || || || | Sbjct 5297 CCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTAT--CGCTGCA 5240 Query 103951 GGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACG 104008 | || |||| || |||||||| || || ||||| || || | || || |||| || Sbjct 5239 GAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACA 5180 Query 104009 GGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCA 104067 ||||||||||| || || ||||| || ||||| || || | |||||| | || || || Sbjct 5179 GGTTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA 5120 Query 104068 GATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACG 104127 || ||||| | ||| | || |||||||||| ||||| ||||| |||| || ||||| Sbjct 5119 GA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 5061 Query 104128 GTT 104130 ||| Sbjct 5060 GTT 5058 >seq25415 Length=1491 Score = 524 bits (580), Expect = 1e-143 Identities = 726/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 1378 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 1319 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 1318 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 1259 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || || || || |||||||| ||||| || Sbjct 1258 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGA 1199 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 1198 TTCAGGGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 1139 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 1138 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 1079 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 1078 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 1019 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || || || |||| || || Sbjct 1018 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 959 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | || ||||| ||||||||||| |||||||| | Sbjct 958 GCGCATAGCAGAGCAGCGCCCAATACCCCAGCAACTCCCATCATATGAAATGGGTTCAAT 899 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 898 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 839 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 838 CTTGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAAACAAAA 779 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 || || || || || ||||| || || ||||| || || || | | || | | ||| Sbjct 778 ACCGCAATTGGACCGGAGAATGCGATTGCATTATAAGGTCGTAATTGAACAGATCGAGCA 719 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || | || || ||||| ||||| |||||| Sbjct 718 AGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGAAGAGCAACAAAA 659 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||| ||||| Sbjct 658 GTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGGCCCCAT 599 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | ||| || | | | | |||||| || || || || || || | ||| Sbjct 598 AGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTTAAGAAG 539 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | || ||||||||||| ||||| |||| || Sbjct 538 TT-GCAGCCTTCCAAATAGGAACTTGCTAATCCATGGGTATACCATGAAGTTACAAAGGT 480 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || |||| ||| ||||| | |||| ||| ||| ||||| || | ||| || || Sbjct 479 TGTACCTGTAAACCAACCCCCTACGGCGAAATAGGCACAAGGAAAGAGCAATAGACCGGA 420 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 419 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633307232944800