Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq21827 497 3e-136 >seq21827 Length=6214 Score = 497 bits (550), Expect = 3e-136 Identities = 702/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || |||||||| || ||||| || |||||||| || || | || | ||| Sbjct 6013 GCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAGTTA 5954 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | ||| ||||||||||| || || || | || | | | | | | |||| Sbjct 5953 GCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 5894 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| ||||| |||||||| || | || | |||| ||| Sbjct 5893 TGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 5834 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| |||||||| ||||| || ||||| || | | ||| || || || || Sbjct 5833 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 5774 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || |||||||| || Sbjct 5773 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAGGTT 5714 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 5713 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 5654 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 5653 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 5594 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | ||||||||| || |||||||| || ||||||||||| ||||| || Sbjct 5593 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 5534 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || || || || | |||||| | |||||||| || || Sbjct 5533 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 5474 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| ||||| | | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 5473 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 5414 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||| ||| | Sbjct 5413 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 5354 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | ||||| | || | || | | ||||| || ||||| | |||| Sbjct 5353 GCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 5294 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | ||| |||||||| || ||||| || || | || || || | | Sbjct 5293 TCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCAGAAGTA 5234 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| ||||| | || || |||| || ||||| Sbjct 5233 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 5174 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| || ||||||||||| || || Sbjct 5173 CGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 5114 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | ||| |||| | || || |||||||| | ||||||||||| | Sbjct 5113 GCGGTCAATAAGGTAGGGA-TCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 5055 Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453 ||| ||| | |||| ||| || Sbjct 5054 AGTGCTGGTTATCCAGTTACAGAA 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146162754106800