Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq21827 589 6e-164 >seq21827 Length=6214 Score = 589 bits (652), Expect = 6e-164 Identities = 740/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 5022 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 5081 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| ||||||||| Sbjct 5082 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCA 5139 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 5140 TTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 5199 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || || ||||||||| | | |||| | || || || | |||| Sbjct 5200 ATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATT 5259 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || |||| |||||||| | || |||| |||||| | |||||||| || |||||| Sbjct 5260 TTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 5319 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | ||||| | | ||| | | ||| |||| || || ||||||| Sbjct 5320 AGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 5379 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 5380 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 5439 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||||||| |||| ||||| ||||| || || |||| Sbjct 5440 CTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGC 5499 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||| ||||| || ||||| | Sbjct 5500 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCC 5559 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | || || || || ||||| || || || | ||| | Sbjct 5560 TTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 5619 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 5620 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 5679 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || || || || || || || || |||| Sbjct 5680 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATG 5739 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| ||||| ||| Sbjct 5740 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACAC 5798 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || |||||||||||| || | || | || ||| Sbjct 5799 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACT 5858 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| |||||||| |||||||| || || |||||||| | ||||||| ||| || | Sbjct 5859 ATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT 5918 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||| |||||||||||| | || ||||| ||| | || | || || ||||| Sbjct 5919 GTAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCAT 5978 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || || || || ||||||||||| || ||||| || | || || ||| Sbjct 5979 GAACGTAACGCTCATAACTTCCCTCTAGATCTAGCTGCGGTCGAAGTT 6026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143488381980880