Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq21827 488 6e-133 seq25415 340 2e-88 >seq21827 Length=6214 Score = 488 bits (540), Expect = 6e-133 Identities = 704/988 (71%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 5031 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 5090 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| ||||| || Sbjct 5091 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCC 5149 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 ||| || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 5150 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 5209 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 5210 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATTTTTACCCGAT 5269 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| || | | || || ||||| || || || |||||||| || || || | Sbjct 5270 ATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 5329 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | ||||| | |||| | || || |||||| | |||||||||| | | | Sbjct 5330 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 5389 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 5390 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 5449 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| | | |||||| | ||||| || || ||||| |||||||| ||||| || Sbjct 5450 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 5509 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| |||||||||||| | || |||||||| || |||||||| || |||||||| Sbjct 5510 CTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 5569 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 || || ||| ||| ||||| ||| | ||||| || || |||||||| ||||| || Sbjct 5570 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 5629 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 ||| | || ||||| | | ||||| || || ||||| || || | || | || Sbjct 5630 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 5689 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || | ||||| ||||| |||||||| || || || || ||||||||||| || || || Sbjct 5690 TTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATGGTTATTTTGG 5749 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 5750 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGC 5809 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||||| || | ||||| || | | ||||| | || ||||| || || Sbjct 5810 TGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTTAA 5869 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTAC 73129 | | || || ||||| ||||||||||| || || ||| ||| || | | ||| Sbjct 5870 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 5929 Query 73130 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 | |||| ||| || | ||| | || ||| | || |||||||||||||||||| | | Sbjct 5930 C----TGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCATGAACGTA 5985 Query 73190 ATGCACACAACTTCCCACTAGACCTAGC 73217 | || || |||||||| ||||| ||||| Sbjct 5986 ACGCTCATAACTTCCCTCTAGATCTAGC 6013 >seq25415 Length=1491 Score = 340 bits (376), Expect = 2e-88 Identities = 698/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 425 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || |||||||| ||| || || || Sbjct 426 CTATTGCTCTTTCCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTT 485 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | ||| || ||| | || || || || ||| Sbjct 486 GTAACTTCATGGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGCAACTTCTTA 545 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | || | | ||||| || ||||| Sbjct 546 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGC 605 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 606 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 665 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | || || | || ||||| |||||||||||| | | || ||||| |||| || Sbjct 666 GCTCTTCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 725 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| |||| ||||| || ||| | || || || | || || || || Sbjct 726 TCTGTTCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTGTT 785 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| |||| ||| | |||||||||| || || || ||| Sbjct 786 TCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTGGT 845 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || || || || ||||| | || | || | || || || || ||| || | || Sbjct 846 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 905 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 906 CCATTTCATATGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 965 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 ||||| || ||| | || || || | |||||| || | | | | Sbjct 966 GGTGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 1008 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| |||| ||| | || || | || || || | ||||| |||||| ||| | Sbjct 1009 CAA-ATACA---TTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 1064 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 1065 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 1124 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 1125 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 1184 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 |||||||| || || || | || || ||||| || ||||| || || | ||||| ||| Sbjct 1185 GGTCTAGCCCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 1244 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || ||||| | || |||||||| | || Sbjct 1245 GATCCGGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 1304 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 1305 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 1364 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 1365 CGTGGAAACGCTCTTTAA 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572686986424800