Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq10742 141 8e-29
seq18889 114 1e-20
seq4874 114 1e-20
>seq10742
Length=3397572
Score = 141 bits (156), Expect = 8e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| |||| || || || || || || || || | || || ||| | |
Sbjct 2148676 GATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAG 2148617
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| || || ||||||||| |||||||| || || ||||| || ||
Sbjct 2148616 TGACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCA 2148557
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||| || || || || ||||| || ||| | | | | ||||| || ||
Sbjct 2148556 ACAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAA 2148497
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||||||| || || ||||||||| |||||||| | |||||
Sbjct 2148496 CATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGAGG 2148449
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| |||| || || || |||||||| || || | ||||| || | |
Sbjct 2149131 ATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAGT 2149072
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || |||||||| || || ||||| || ||||| || ||
Sbjct 2149071 GACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGACCAG 2149012
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||| ||||| || || ||||| || ||| | | | || || || |||
Sbjct 2149011 CAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148952
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| ||||| | || || | |||||
Sbjct 2148951 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148905
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| |||| || || || || || || || || | || || ||| | |
Sbjct 2148904 GATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAG 2148845
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || ||| || || ||||||||||| || || ||||| |||||
Sbjct 2148844 TGACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCA 2148785
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||| || || || || ||||| || ||| | | | || || || ||
Sbjct 2148784 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAA 2148725
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| || || || ||| ||||| | || || | |||||
Sbjct 2148724 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148677
>seq18889
Length=1054283
Score = 114 bits (126), Expect = 1e-20
Identities = 497/778 (64%), Gaps = 30/778 (4%)
Strand=Plus/Plus
Query 138483 GTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTA 138542
||| || | ||||| | ||||| | |||||| || || | || |||| || |||
Sbjct 964031 GTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTA 964090
Query 138543 AATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGC 138602
|||||| ||||| | | || | || || ||||| || || || || || |||| ||
Sbjct 964091 GATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGC 964150
Query 138603 GGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGA--AGCTTGATTCGTTCC 138660
|| ||||| |||| ||| || |||| | |||||| ||| ||| |||
Sbjct 964151 TGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTC--TCC 964208
Query 138661 TTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720
|| ||| | ||||||||| | || | || || | |||||| ||||| || |
Sbjct 964209 TTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCAGA 964268
Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAAC 138780
|| ||| ||| | || |||| ||| | || || || || || ||||||
Sbjct 964269 ATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAAC 964328
Query 138781 TCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT 138840
||| ||| ||||| || ||| ||||||| || ||||| ||||| ||| ||||
Sbjct 964329 TCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGC 964388
Query 138841 CGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGC 138900
|||| || | || || | || || | | |||| || || || || || |||
Sbjct 964389 TGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGC 964448
Query 138901 ACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATA---GGA 138957
|| || | || | || | |||||| ||||| || | ||||| | ||
Sbjct 964449 ACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAA---TTCTCTGCTTCAGGAACTGGG 964505
Query 138958 TAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTT 139017
|| ||||| | || ||||| || || | ||||| || | || ||||| | ||
Sbjct 964506 TAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGT-GACTGAGGC 964564
Query 139018 AATCGTTCA-AAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGAC 139076
|| | || ||||| | |||| || | || | ||| | ||||||
Sbjct 964565 AAGCTTTTTGAAATCAAAGGTGC-------GTTCTGGAGTA-----ACATACATGTTGAG 964612
Query 139077 ACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT-GTAT--TCGACAAT 139133
| ||| ||||| | ||| || || || ||||| || | ||| |||| || |||||
Sbjct 964613 AGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCT---TTGCTTGTATACTCCACAAT 964669
Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193
|| | ||||| ||||| || ||||| || || ||||| || || || || || | |||
Sbjct 964670 CTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTT 964729
Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251
||| ||||||||||| | ||| || ||||| || ||||| || | |||||| |||
Sbjct 964730 ACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATG 964787
>seq4874
Length=535125
Score = 114 bits (126), Expect = 1e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || ||||| ||||| || || || || ||| |
Sbjct 501803 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATTACCCTTGAGGTGGAGCCCAGC 501862
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||||||||| || || || || || ||||||||
Sbjct 501863 GACACTATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAGGGCATTCCCCCCGATCAG 501922
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||| || |||||||| || ||| | | | | || || || |||
Sbjct 501923 CAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 501982
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 501983 ATCCAGAAAGAATCTACCCTCCATCTTG 502010
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || || || |||
Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||| ||||| || || || |||||
Sbjct 502775 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502834
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||||| || ||||| || ||| | | | | || || || |||
Sbjct 502835 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 502894
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || ||||| || || || | ||| |||| || | || |||
Sbjct 502895 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGTGGC 502942
Score = 102 bits (112), Expect = 7e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || ||||| || || || || |||
Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||| ||||| || || || |||||
Sbjct 502547 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502606
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| ||||| || ||||| || ||| | | | | || || || |||
Sbjct 502607 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502666
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 502667 ATCCAGAAAGAATCCACCCTCCATCTTG 502694
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || || || |||
Sbjct 502031 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502090
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||| ||||| || || || |||||
Sbjct 502091 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502150
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| ||||| || ||||| || ||| | | | | || || || |||
Sbjct 502151 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502210
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 502211 ATCCAGAAAGAATCTACCCTCCATCTTG 502238
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || || || || || |||
Sbjct 502259 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502318
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||| ||||| || || || |||||
Sbjct 502319 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502378
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| ||||| || ||||| || ||| | | | | || || || |||
Sbjct 502379 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502438
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || || || ||||
Sbjct 502439 ATCCAGAAAGAATCTACCCTCCATCTTG 502466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449751045856800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |