Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3171 338 5e-87 seq1110 104 2e-16 seq24987 100 2e-15 seq24691 87.8 1e-11 >seq3171 Length=1257762 Score = 338 bits (374), Expect = 5e-87 Identities = 979/1496 (65%), Gaps = 22/1496 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || || ||||| ||||| | || ||||| |||||||| || ||||| Sbjct 1254185 GCAGAGACATTGAGGATGCCATTCGCATCAATGTCGAATGTTACTTCAATCTGCGGGACT 1254244 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | || ||||||||||| || | |||| | || || || || |||||| Sbjct 1254245 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAATTTGCCGAGGAGGTTGTTGTCTTTA 1254304 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||| || || | ||||| || | | || ||||| || || Sbjct 1254305 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 1254364 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || | | || || ||| || || || ||||| | | || | |||| Sbjct 1254365 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 1254424 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | || || |||||||| | || | ||| || |||| ||||| | | | | Sbjct 1254425 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 1254484 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | || | || || || | || | || ||||| || || | ||||| ||||| Sbjct 1254485 TCCTGGACATTCTCCGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 1254544 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 1254545 GCCACTGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 1254604 Query 281846 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 281905 || |||| | | |||||||| | | ||||| ||||| | || || || | | | Sbjct 1254605 AGTAGTTTTTGGATTTTAGGAATTCTCGTGGATCCACCAACCAGGACGATGTCGTTGATC 1254664 Query 281906 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTA 281965 | || || ||||| || | || |||| |||| ||||| || || || | || Sbjct 1254665 TTGGACTTGTCCAGCTTGGCGTCTTGTAAAGCTTTCTCAACTGGGTCTAGTGTTCCCCTG 1254724 Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAA 282023 || | |||||| |||||||| ||| |||| | ||| || ||| | || || |||| Sbjct 1254725 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCACGAGT--GATTGAGGTGTAAAAGTCAA 1254782 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083 ||||||| | | ||| |||| ||| || | | ||| || || ||||| | | | Sbjct 1254783 TTCCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCT 1254842 Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTG 282143 | || ||||||||||| || | || || | | ||| | || ||| | ||| | Sbjct 1254843 TGGCGCGTTCACATGCCGTTCGCAGCCTCCTCACTGCTCT--CTTATTTTGGCTAATGTC 1254900 Query 282144 TTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 282201 ||| | | |||||||| || || |||||| | | || | |||||| ||||| || Sbjct 1254901 TTTCTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTC 1254960 Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 282261 ||| || ||||| | || | || | || ||| |||| | |||| |||||||||| Sbjct 1254961 TTCTCCGCCCAAGTGTGTGTCACCGGCTGTGGCTTTTACCTCAAAAATACCATCTTCAAT 1255020 Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 | || | | || ||| || |||||||||| |||||| || || ||||| || Sbjct 1255021 TGTCAGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAGATGAGAACATT----TC 1255076 Query 282322 TTTGTCTTGGTTT----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 | | | ||| || || | |||||| |||| ||| || || ||||||||||| | Sbjct 1255077 GCTCCCCTCTTTTCCCCTTGTCTAAACCATATGCAATAGCGGCTGCGGTTGGTTCATTGA 1255136 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | ||||||| ||||| || |||| ||| ||| |||||||| |||||||| | || | Sbjct 1255137 TGATTCTCAGCACATTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGCTGGG 1255196 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAA 282496 | ||||| ||||| ||||| || || || || |||| | ||| ||| |||| ||| Sbjct 1255197 AGTCGTTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTGCCCCAA-ATAC 1255255 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 || ||| ||| ||||| ||| |||| ||||||||| |||| ||||||| || | Sbjct 1255256 GCCTCTGCAATTTCCTTCATCTTAACCAAAACCATTGATGAGATTTCTTCTGGATAAAAC 1255315 Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 282616 ||| | ||| || || ||||| | | || || || || | || ||| Sbjct 1255316 GCCTTTGTCTCACCTTTGTACTCCACTTCTACTTTGGGCTTGCCACTGTCACTGATGACT 1255375 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || || |||||| ||||| || | ||| ||| | ||||||| ||| | ||| || || Sbjct 1255376 TTGAAAGGCCAAAGCTTCATGTCAGCTTGCACAATATGGTCATCAAATTTTCTCCCTATG 1255435 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | || || |||||||| || || || | || || | || | || | ||||||||| Sbjct 1255436 AGTCTCTTGGCATCAAAGATGGTGTTAATCGGGTTCATGGCCACCTGGTTTTTGGCTGCG 1255495 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || ||||| | | ||||| || || || | |||||| || || |||||||| || Sbjct 1255496 TCACCAATTAACCGCTCTGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGATTGCCC 1255555 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || || || || || || ||||| |||| || | ||||| || || | || Sbjct 1255556 TGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGGAGTAGGTG 1255615 Query 282857 GTTCCTAAATCAATACCAATAGCAA---TTTTATCTGACATTATTATTATGACTCT 282909 || || | ||||| ||||| | || |||| | ||||| || || | ||||| Sbjct 1255616 GTGCCCAGGTCAATGCCAATGGAAAGACCTTTAGCAGACATGTTTGTT-TTACTCT 1255670 >seq1110 Length=1300725 Score = 104 bits (114), Expect = 2e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | ||| |||||||||||||||||||| | ||||| ||||||||||| Sbjct 27587 TTTGTCCACGGCTGACACGTTAAGAATACCATTGGCATCAATGTCAAAGGTGACTTCAAT 27528 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || ||||| ||||| ||||||||||||| || | | ||| ||||||| | || Sbjct 27527 CTGGGGGACACCTCTTGGAGCAGGTGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTT 27468 Query 281536 ATTATCTTTAGT 281547 || |||||||| Sbjct 27467 GTTGTCTTTAGT 27456 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| || || || ||||||||||| || || | || ||| Sbjct 26456 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA 26397 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| ||| |||||||| || || || | || || || || || || Sbjct 26396 TTAAGCCCAGCAATAGCTCCAGCATCTTTGGTTGCCTGGCGCTGGGAGTCATTGAAGTAG 26337 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | ||| |||| |||| Sbjct 26336 GCAGGGACAGTTACAACTGCAT-TGTT 26311 >seq24987 Length=1398849 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||| ||||| || || ||||| | | ||||||||||||| | Sbjct 197260 CCATAAGCAATAGCAGCAGCTGTTGGCTCGTTGATAATGCAAAGAACATTAAGACCACAA 197201 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||||||||||| || || |||| || ||||| || || || || || ||||| Sbjct 197200 ATGACTCCTGCATCTTTTGTAGCCTGTCGCTGAGAATCATTGAAGTAGGCTGGCACAGTC 197141 Query 282464 ATAACGGCAT 282473 | ||| |||| Sbjct 197140 ACAACAGCAT 197131 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| || ||| |||| || |||||||| || || || |||| | ||| ||| Sbjct 198435 GCAGACACATTCAGTATATCATTAGCGTCCAAATCGAACGTTACATCAACCTTAGGAACC 198376 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || || || ||||| || ||||| |||| | |||| | | ||||||||||| Sbjct 198375 CCCCTTGGACATGGGGGGATTCCAGTCAAATCAAATTTCCCCAAACTGTTATTATCTTTG 198316 Query 281546 GTGAATTTTCGTTCACC 281562 || ||| || |||||| Sbjct 198315 GTCAATGATCTTTCACC 198299 >seq24691 Length=1849 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| || || ||||| |||| || || || || || || || || ||||||| ||||| Sbjct 1375 TTTGTCCAGGCCATAGGCAATGGCGGCGGCTGTGGGCTCGTTGATGATTCTCAGGACATT 1434 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || ||||| || ||||| ||||||||||||||||| || || ||||| || || || Sbjct 1435 GAGGCCAGCGATCACACCTGCGTCTTTAGTGGCTTGTCTCTGAGAGTCGTTGAAGTAGGC 1494 Query 282454 AGGAACAGTAATAACGGC 282471 || || || || || || Sbjct 1495 CGGGACTGTGATTACTGC 1512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739350964129560