Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3171 338 5e-87
seq1110 104 2e-16
seq24987 100 2e-15
seq24691 87.8 1e-11
>seq3171
Length=1257762
Score = 338 bits (374), Expect = 5e-87
Identities = 979/1496 (65%), Gaps = 22/1496 (1%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| || || ||||| ||||| | || ||||| |||||||| || |||||
Sbjct 1254185 GCAGAGACATTGAGGATGCCATTCGCATCAATGTCGAATGTTACTTCAATCTGCGGGACT 1254244
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
||||| | || ||||||||||| || | |||| | || || || || ||||||
Sbjct 1254245 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAATTTGCCGAGGAGGTTGTTGTCTTTA 1254304
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| | | |||||| || || | ||||| || | | || ||||| || ||
Sbjct 1254305 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 1254364
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || | | || || ||| || || || ||||| | | || | ||||
Sbjct 1254365 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 1254424
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| | || || |||||||| | || | ||| || |||| ||||| | | | |
Sbjct 1254425 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 1254484
Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785
| || | || || || | || | || ||||| || || | ||||| |||||
Sbjct 1254485 TCCTGGACATTCTCCGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 1254544
Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845
|| || |||||||| || || | ||| || | | | ||||| || || |
Sbjct 1254545 GCCACTGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 1254604
Query 281846 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 281905
|| |||| | | |||||||| | | ||||| ||||| | || || || | | |
Sbjct 1254605 AGTAGTTTTTGGATTTTAGGAATTCTCGTGGATCCACCAACCAGGACGATGTCGTTGATC 1254664
Query 281906 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTA 281965
| || || ||||| || | || |||| |||| ||||| || || || | ||
Sbjct 1254665 TTGGACTTGTCCAGCTTGGCGTCTTGTAAAGCTTTCTCAACTGGGTCTAGTGTTCCCCTG 1254724
Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAA 282023
|| | |||||| |||||||| ||| |||| | ||| || ||| | || || ||||
Sbjct 1254725 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCACGAGT--GATTGAGGTGTAAAAGTCAA 1254782
Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083
||||||| | | ||| |||| ||| || | | ||| || || ||||| | | |
Sbjct 1254783 TTCCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCT 1254842
Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTG 282143
| || ||||||||||| || | || || | | ||| | || ||| | ||| |
Sbjct 1254843 TGGCGCGTTCACATGCCGTTCGCAGCCTCCTCACTGCTCT--CTTATTTTGGCTAATGTC 1254900
Query 282144 TTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 282201
||| | | |||||||| || || |||||| | | || | |||||| ||||| ||
Sbjct 1254901 TTTCTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTC 1254960
Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 282261
||| || ||||| | || | || | || ||| |||| | |||| ||||||||||
Sbjct 1254961 TTCTCCGCCCAAGTGTGTGTCACCGGCTGTGGCTTTTACCTCAAAAATACCATCTTCAAT 1255020
Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321
| || | | || ||| || |||||||||| |||||| || || ||||| ||
Sbjct 1255021 TGTCAGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAGATGAGAACATT----TC 1255076
Query 282322 TTTGTCTTGGTTT----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377
| | | ||| || || | |||||| |||| ||| || || ||||||||||| |
Sbjct 1255077 GCTCCCCTCTTTTCCCCTTGTCTAAACCATATGCAATAGCGGCTGCGGTTGGTTCATTGA 1255136
Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437
| ||||||| ||||| || |||| ||| ||| |||||||| |||||||| | || |
Sbjct 1255137 TGATTCTCAGCACATTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGCTGGG 1255196
Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAA 282496
| ||||| ||||| ||||| || || || || |||| | ||| ||| |||| |||
Sbjct 1255197 AGTCGTTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTGCCCCAA-ATAC 1255255
Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556
|| ||| ||| ||||| ||| |||| ||||||||| |||| ||||||| || |
Sbjct 1255256 GCCTCTGCAATTTCCTTCATCTTAACCAAAACCATTGATGAGATTTCTTCTGGATAAAAC 1255315
Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 282616
||| | ||| || || ||||| | | || || || || | || |||
Sbjct 1255316 GCCTTTGTCTCACCTTTGTACTCCACTTCTACTTTGGGCTTGCCACTGTCACTGATGACT 1255375
Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676
|| || |||||| ||||| || | ||| ||| | ||||||| ||| | ||| || ||
Sbjct 1255376 TTGAAAGGCCAAAGCTTCATGTCAGCTTGCACAATATGGTCATCAAATTTTCTCCCTATG 1255435
Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736
| || || |||||||| || || || | || || | || | || | |||||||||
Sbjct 1255436 AGTCTCTTGGCATCAAAGATGGTGTTAATCGGGTTCATGGCCACCTGGTTTTTGGCTGCG 1255495
Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796
|| ||||| | | ||||| || || || | |||||| || || |||||||| ||
Sbjct 1255496 TCACCAATTAACCGCTCTGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGATTGCCC 1255555
Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856
|| || || || || || || ||||| |||| || | ||||| || || | ||
Sbjct 1255556 TGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGGAGTAGGTG 1255615
Query 282857 GTTCCTAAATCAATACCAATAGCAA---TTTTATCTGACATTATTATTATGACTCT 282909
|| || | ||||| ||||| | || |||| | ||||| || || | |||||
Sbjct 1255616 GTGCCCAGGTCAATGCCAATGGAAAGACCTTTAGCAGACATGTTTGTT-TTACTCT 1255670
>seq1110
Length=1300725
Score = 104 bits (114), Expect = 2e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475
||| || |||| | ||| |||||||||||||||||||| | ||||| |||||||||||
Sbjct 27587 TTTGTCCACGGCTGACACGTTAAGAATACCATTGGCATCAATGTCAAAGGTGACTTCAAT 27528
Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535
|| ||||| ||||| ||||||||||||| || | | ||| ||||||| | ||
Sbjct 27527 CTGGGGGACACCTCTTGGAGCAGGTGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTT 27468
Query 281536 ATTATCTTTAGT 281547
|| ||||||||
Sbjct 27467 GTTGTCTTTAGT 27456
Score = 91.5 bits (100), Expect = 1e-12
Identities = 109/147 (74%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| || || || ||||||||||| || || | || |||
Sbjct 26456 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA 26397
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
||||| |||||||| ||| |||||||| || || || | || || || || || ||
Sbjct 26396 TTAAGCCCAGCAATAGCTCCAGCATCTTTGGTTGCCTGGCGCTGGGAGTCATTGAAGTAG 26337
Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478
||||| ||||| | ||| |||| ||||
Sbjct 26336 GCAGGGACAGTTACAACTGCAT-TGTT 26311
>seq24987
Length=1398849
Score = 100 bits (110), Expect = 2e-15
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| ||||||||| ||||| || || ||||| | | ||||||||||||| |
Sbjct 197260 CCATAAGCAATAGCAGCAGCTGTTGGCTCGTTGATAATGCAAAGAACATTAAGACCACAA 197201
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| |||||||||||| || || |||| || ||||| || || || || || |||||
Sbjct 197200 ATGACTCCTGCATCTTTTGTAGCCTGTCGCTGAGAATCATTGAAGTAGGCTGGCACAGTC 197141
Query 282464 ATAACGGCAT 282473
| ||| ||||
Sbjct 197140 ACAACAGCAT 197131
Score = 86.0 bits (94), Expect = 5e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| |||||| || ||| |||| || |||||||| || || || |||| | ||| |||
Sbjct 198435 GCAGACACATTCAGTATATCATTAGCGTCCAAATCGAACGTTACATCAACCTTAGGAACC 198376
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| || || || ||||| || ||||| |||| | |||| | | |||||||||||
Sbjct 198375 CCCCTTGGACATGGGGGGATTCCAGTCAAATCAAATTTCCCCAAACTGTTATTATCTTTG 198316
Query 281546 GTGAATTTTCGTTCACC 281562
|| ||| || ||||||
Sbjct 198315 GTCAATGATCTTTCACC 198299
>seq24691
Length=1849
Score = 87.8 bits (96), Expect = 1e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393
||| || || ||||| |||| || || || || || || || || ||||||| |||||
Sbjct 1375 TTTGTCCAGGCCATAGGCAATGGCGGCGGCTGTGGGCTCGTTGATGATTCTCAGGACATT 1434
Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453
|| ||||| || ||||| ||||||||||||||||| || || ||||| || || ||
Sbjct 1435 GAGGCCAGCGATCACACCTGCGTCTTTAGTGGCTTGTCTCTGAGAGTCGTTGAAGTAGGC 1494
Query 282454 AGGAACAGTAATAACGGC 282471
|| || || || || ||
Sbjct 1495 CGGGACTGTGATTACTGC 1512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739350964129560
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