Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4874 105 2e-17 seq10742 93.3 1e-13 >seq4874 Length=535125 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| |||| ||||| |||| Sbjct 502034 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGTGAC 502093 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||| ||| || || || Sbjct 502094 ACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502153 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| |||||| | |||||||| | || | |||| |||||| || Sbjct 502154 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502213 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||||| || || ||||| Sbjct 502214 CAGAAAGAATCTACCCTCCATCTTGT 502239 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| |||| ||||| |||| Sbjct 502262 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGTGAC 502321 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||| ||| || || || Sbjct 502322 ACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502381 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| |||||| | |||||||| | || | |||| |||||| || Sbjct 502382 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502441 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||||| || || ||||| Sbjct 502442 CAGAAAGAATCTACCCTCCATCTTGT 502467 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || || ||| |||| ||||| |||| Sbjct 502490 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGTGAC 502549 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||| ||| || || || Sbjct 502550 ACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502609 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| |||||| | |||||||| | || | |||| |||||| || Sbjct 502610 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502669 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || || || ||||| Sbjct 502670 CAGAAAGAATCCACCCTCCATCTTGT 502695 >seq10742 Length=3397572 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || ||||| |||||||||||||| || Sbjct 2149134 AAAATG---CAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAG 2149078 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||||| | ||| || ||| ||||| || || || ||||| || || Sbjct 2149077 CCGAGTGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCT 2149018 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || || || || || |||||| | |||||||| | ||| | | || Sbjct 2149017 GACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGAC 2148958 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| || || ||||| || Sbjct 2148957 TACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 2148923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| || ||| |||| Sbjct 2148900 CAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGTGAC 2148841 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| |||||||| ||||| || ||| || || || Sbjct 2148840 ACCATTGAGAATGTGAAAGCCAAA-ATTCAAGACAAAGAGGGTATTCCTCCTGATCAGCA 2148782 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || || ||||| || |||||| | |||||||| | ||| | | || |||||| | Sbjct 2148781 GAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAACAT 2148722 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||| || || ||||| || Sbjct 2148721 CCAGAAGGAGTCCACCCTCCACCTGGT 2148695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181426197421260