Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 105 2e-17
seq10742 93.3 1e-13
>seq4874
Length=535125
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| ||||| || || || |||||| |||| ||||| ||||
Sbjct 502034 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGTGAC 502093
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| ||||| || || || ||||| ||| || || ||
Sbjct 502094 ACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502153
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||||||||| |||||| | |||||||| | || | |||| |||||| ||
Sbjct 502154 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502213
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||||| ||||| || || |||||
Sbjct 502214 CAGAAAGAATCTACCCTCCATCTTGT 502239
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| ||||| || || || |||||| |||| ||||| ||||
Sbjct 502262 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGTGAC 502321
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| ||||| || || || ||||| ||| || || ||
Sbjct 502322 ACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502381
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||||||||| |||||| | |||||||| | || | |||| |||||| ||
Sbjct 502382 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502441
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||||| ||||| || || |||||
Sbjct 502442 CAGAAAGAATCTACCCTCCATCTTGT 502467
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| ||||| || || || || ||| |||| ||||| ||||
Sbjct 502490 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGTGAC 502549
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| ||||| || || || ||||| ||| || || ||
Sbjct 502550 ACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 502609
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||||||||| |||||| | |||||||| | || | |||| |||||| ||
Sbjct 502610 AGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 502669
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||||| || || || || |||||
Sbjct 502670 CAGAAAGAATCCACCCTCCATCTTGT 502695
>seq10742
Length=3397572
Score = 93.3 bits (102), Expect = 1e-13
Identities = 150/215 (70%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| ||| || || || || || ||||| |||||||||||||| ||
Sbjct 2149134 AAAATG---CAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAG 2149078
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
||||||| | ||| || ||| ||||| || || || ||||| || ||
Sbjct 2149077 CCGAGTGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCT 2149018
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| || || || || || || || |||||| | |||||||| | ||| | | ||
Sbjct 2149017 GACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGAC 2148958
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||| ||||||| ||||| || || ||||| ||
Sbjct 2148957 TACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 2148923
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || || || || ||||||||||| || ||| ||||
Sbjct 2148900 CAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGTGAC 2148841
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| ||| |||||||| ||||| || ||| || || ||
Sbjct 2148840 ACCATTGAGAATGTGAAAGCCAAA-ATTCAAGACAAAGAGGGTATTCCTCCTGATCAGCA 2148782
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|| || || ||||| || |||||| | |||||||| | ||| | | || |||||| |
Sbjct 2148781 GAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAACAT 2148722
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||| ||||| || || ||||| ||
Sbjct 2148721 CCAGAAGGAGTCCACCCTCCACCTGGT 2148695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181426197421260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |