Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq21827 545 7e-151 >seq21827 Length=6214 Score = 545 bits (604), Expect = 7e-151 Identities = 702/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 5058 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 5116 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || || || || |||||||| || || || Sbjct 5117 TTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 5176 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 5177 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 5236 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || |||||||| ||| |||||||| Sbjct 5237 TTCTGCA--GCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAA 5294 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | ||||| | |||| || | Sbjct 5295 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCT 5354 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 5355 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 5414 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||| ||| | ||| Sbjct 5415 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGT 5474 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| ||| |||| |||||| | || || || || || ||||||| |||| | Sbjct 5475 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 5534 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || |||||||| || || ||||| || |||||||| || |||||| | ||||| ||||| Sbjct 5535 GTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGT 5594 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | ||| Sbjct 5595 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 5653 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||| ||||| Sbjct 5654 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 5713 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 || || || |||||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 5714 AACCTACAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 5773 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || |||||| ||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 5774 TTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTG 5833 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| || || || || ||||| ||||| | || ||||| || || ||||| Sbjct 5834 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCA 5893 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | |||||||| |||||||| ||||||||| || |||| || || Sbjct 5894 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGC 5953 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||| | || | ||||| |||||||| ||||| |||||||||||||| || ||||| || Sbjct 5954 TAACTTGGGTATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGC 6013 Query 29616 T 29616 | Sbjct 6014 T 6014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146620212496760