Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10742 122 8e-23 seq4874 111 1e-19 >seq10742 Length=3397572 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| || | || | || |||||| || | || ||||||||||||||||| || Sbjct 2148446 TTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCT 2148505 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | ||| || | || || ||||||||||| || || |||| || ||| ||||| | | Sbjct 2148506 GAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGA 2148565 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | | ||| |||||| ||||||| ||| | || | | ||||| || | |||| Sbjct 2148566 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCC 2148625 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || |||| || || ||||| |||||||| Sbjct 2148626 ACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || || ||||||||||| ||||| Sbjct 2148940 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAA 2148999 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||| ||| |||||| ||||| | Sbjct 2149000 AATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTT 2149059 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| |||| || || |||| ||||| |||||||| |||| || || || Sbjct 2149060 TTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAAC 2149119 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 2149120 AAAGATCTGCATTTTG 2149135 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || || ||||||||||| || || Sbjct 2148712 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAA 2148771 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| || |||||| || | ||||| | ||| |||| | ||| ||| || |||| | Sbjct 2148772 AATCAGCCTCTGCTGATCAGGAGGAATACCCTCTTTGT-CTTGAATTTTGGCTTTCACAT 2148830 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | ||| ||||||| ||||| || || || |||| || || | Sbjct 2148831 TCTCAATGGTGTCACTTGGTTCAACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAA 2148890 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 2148891 CAAAGATCTGCAT 2148903 >seq4874 Length=535125 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 502221 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 502162 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| || Sbjct 502161 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 502102 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || || | ||||||||| Sbjct 502101 TCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACA 502042 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 502041 AAGATCTGCAT 502031 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 502449 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 502390 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| || Sbjct 502389 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 502330 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || || | ||||||||| Sbjct 502329 TCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACA 502270 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 502269 AAGATCTGCAT 502259 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | ||| || | || || |||||||| || ||||| Sbjct 502905 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 502846 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| || Sbjct 502845 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 502786 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || || | ||||||||| Sbjct 502785 TCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACA 502726 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 502725 AAGATCTGCAT 502715 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 502677 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 502618 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| || Sbjct 502617 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 502558 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || || | ||||||||| Sbjct 502557 TCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTCTTCCCAGTGAGGGTTTTCACA 502498 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 502497 AAGATCTGCAT 502487 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| | ||| || | || || ||||| || || ||||| Sbjct 501993 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAG 501934 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || |||||| || |||||| || | | | Sbjct 501933 ATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCTTGGATCTTGGCTTTAACATTC 501874 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | |||||||| | || || ||||| || || | ||||||||| Sbjct 501873 TCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACA 501814 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 501813 AAGATCTGCAT 501803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450646753984800