Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq21827 605 3e-168 seq25415 500 1e-136 >seq21827 Length=6214 Score = 605 bits (670), Expect = 3e-168 Identities = 714/961 (74%), Gaps = 4/961 (0%) Strand=Plus/Plus Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 5058 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 5117 Query 160047 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 160105 ||||| || || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 5118 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 5176 Query 160106 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 160165 ||| || |||| || || | ||||| ||||| || || |||||||| || |||| | Sbjct 5177 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 5236 Query 160166 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 160225 ||| || || ||| | || || || || || |||||||| || || ||||||| || Sbjct 5237 TTCTGCAGCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATG 5296 Query 160226 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGC 160285 | | || || |||||||||| | || | || | ||||| | | || | | Sbjct 5297 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 5356 Query 160286 ATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 160345 |||||||| ||||||||||||||| | |||| | ||||||||||| ||||| ||| Sbjct 5357 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 5416 Query 160346 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCA 160405 |||||||| ||||| || || || || ||||||| ||| | | ||||| | ||||| Sbjct 5417 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 5476 Query 160406 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 160465 ||| || || || | ||||||||| || |||||||||||||| |||| |||| |||| Sbjct 5477 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5536 Query 160466 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 160525 ||||||||| || ||||| ||||||||||| || || |||||| | ||||| ||||| || Sbjct 5537 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5596 Query 160526 ATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC- 160584 |||||| || || | ||| ||||||||| || | || ||||| | | | || Sbjct 5597 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCA 5655 Query 160585 GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGA 160644 | ||||| || |||| || || || | ||||| | ||||||||||||||||| | Sbjct 5656 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 5715 Query 160645 CCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCAT 160704 ||||||| ||||| || || |||||||| || || || ||||||||||||||||| | Sbjct 5716 CCTACAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 5775 Query 160705 TCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGT 160764 |||||||||| ||||| | ||||||||||| || || ||||||||||| || || |||| Sbjct 5776 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 5835 Query 160765 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 160824 |||||||| | ||| ||||||| ||||| || ||| | || |||||||| |||||||| | Sbjct 5836 TCACTGCTTTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAAT 5895 Query 160825 CCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTG 160884 | | | ||| |||||||||||||| | || |||||||| || | | || |||||| Sbjct 5896 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTA 5955 Query 160885 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTG 160944 | |||||||||||||||||||| |||||||| || |||||||| || || || |||| Sbjct 5956 ACTTGGGTATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGCTG 6015 Query 160945 C 160945 | Sbjct 6016 C 6016 >seq25415 Length=1491 Score = 500 bits (554), Expect = 1e-136 Identities = 726/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 425 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | || | || |||||| |||| || ||||| || Sbjct 426 CTATTGCTCTTTCCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTT 485 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||||||| | | ||| ||| ||||| | Sbjct 486 GTAACTTCATGGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGC-AACTTCTT 544 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || || ||||| ||||| ||| | | | | || ||| || || || || |||| Sbjct 545 AACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTACTATGGG 603 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 | ||||| || ||||| ||||| || ||| ||| | || || || |||| ||||| Sbjct 604 GCCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTG 663 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || || || || || |||| ||||| || |||||| | ||||| |||||||| || | Sbjct 664 TTGCTCTTCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 723 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | || || || ||||| || || ||||| ||||| ||||| ||||||| Sbjct 724 GATCTGTTCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTG 783 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | || ||||| || || || | |||||||| ||||||| || || || |||| Sbjct 784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTG 843 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| ||| Sbjct 844 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 903 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || |||||||||||||||||||| || | || | || || |||| ||||||| Sbjct 904 ACCCATTTCATATGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 963 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGGG 1023 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 1024 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 1083 Query 162406 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 162465 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 1084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 1143 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 162525 | || || | ||| |||||| || |||| | | ||||| || || || || | Sbjct 1144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGAATCTAC 1203 Query 162526 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGT 162585 |||| || || ||||| |||||| ||| | ||||| |||||||| || ||||| || | Sbjct 1204 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 1263 Query 162586 TCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 162645 ||||||| || || ||||| | || ||||| | ||||| ||| | || || || | Sbjct 1264 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 1323 Query 162646 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 1324 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 1383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559321741572000