Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq21827 572 2e-158 seq25415 434 2e-116 >seq21827 Length=6214 Score = 572 bits (634), Expect = 2e-158 Identities = 709/962 (74%), Gaps = 6/962 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 5058 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 5117 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||||||| | | ||| || || || || || || || || ||||| Sbjct 5118 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 5176 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | ||||||||||| || || |||||||| || |||||| Sbjct 5177 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 5236 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | || || ||||| || |||||||| || | | || ||||| Sbjct 5237 TTCTGCAGCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATG 5296 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| | ||| |||| | ||||| | ||||| | Sbjct 5297 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 5356 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 5357 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 5416 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| ||| | || || ||| | ||||||| | ||||| Sbjct 5417 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 5476 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || |||| ||||| | || |||||||| || ||||||| |||| | || Sbjct 5477 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5536 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 |||||||| || || |||||| | |||||||| || |||||||| || || || ||||| Sbjct 5537 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5596 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCC 175092 ||||| || || | ||| || ||||||||||| |||| || || | ||| || Sbjct 5597 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCA 5655 Query 175093 GTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGA 175152 | || || || |||| ||| || || | ||||||| ||||| ||||| ||||| | Sbjct 5656 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 5715 Query 175153 CCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212 |||| || ||||| || || ||||| || || || || |||||||||||||| ||| | Sbjct 5716 CCTACAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 5775 Query 175213 TCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGT 175272 |||||||||| || || | ||||||||| |||| || ||||| || || ||||| |||| Sbjct 5776 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 5835 Query 175273 TCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGT 175332 |||| || | ||| || ||| ||||| || ||| | ||||||||||| |||||||| | Sbjct 5836 TCACTGCTTTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAAT 5895 Query 175333 CTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392 |||| | || | |||||| | ||| | || |||||||| ||| || | ||| | ||| Sbjct 5896 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCT- 5954 Query 175393 GTCTTGGG-ATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCA 175451 |||||| |||||||| |||||||| | || || || |||||||| |||||| | || Sbjct 5955 AACTTGGGTATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGCT 6014 Query 175452 GC 175453 || Sbjct 6015 GC 6016 >seq25415 Length=1491 Score = 434 bits (480), Expect = 2e-116 Identities = 703/1009 (70%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || ||||| || | Sbjct 368 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 427 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | ||| | || || ||| |||| || ||||| ||||| Sbjct 428 ATTGCTCTTTCCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTTGT 487 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| |||||||| | || ||||||| | || || ||| ||||| | | Sbjct 488 AACTTCATGGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGC-AACTTCTTAA 546 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || ||||||||| || | | | || ||| | | |||| ||||| | Sbjct 547 CCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGCC 606 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | || || || || || ||| ||| | || || || ||| | ||||||| Sbjct 607 CTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTG 666 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 |||| ||||| || |||| || || || |||||| | ||||| |||||||| || || Sbjct 667 CTCTTCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGAT 726 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| ||||| || || || ||||| Sbjct 727 CTGTTCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTGTTT 786 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| || || | || || |||||||| ||| ||||||||||| || ||||||| Sbjct 787 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTGGTG 846 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | || || || ||| ||||| | | ||| | || || || || || |||||| |||||| Sbjct 847 TAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACC 906 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || |||||||||||||||||||| || | || | || || |||| || || |||| Sbjct 907 CATTTCATATGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATG 966 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | ||| || |||||||| ||| ||||||||| || || || ||| || | Sbjct 967 GTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGGGCTT 1026 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | ||||| || ||||| ||||| || || |||||||| ||||| | Sbjct 1027 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 1086 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| | Sbjct 1087 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 1146 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | || | ||| | ||| | | |||| | | || || || || ||||| |||| Sbjct 1147 CAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGAATCTACGTG 1206 Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 | ||||| || || || || || | ||||| |||||||| || ||||| ||||||| Sbjct 1207 CCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 1266 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || || | |||||||| | | || |||||||| || ||||| | Sbjct 1267 ACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 1326 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 1327 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729691825432800