Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq21827 600 1e-166 seq25415 495 4e-135 >seq21827 Length=6214 Score = 600 bits (664), Expect = 1e-166 Identities = 729/988 (74%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 5031 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 5090 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 5091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 5149 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | ||||||||||| Sbjct 5150 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 5209 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || |||||||| || | || | ||| || || ||| | || || ||||| || Sbjct 5210 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATTTTTACCCGAT 5269 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || || | ||||| ||| | || || |||||||||| | || | || Sbjct 5270 ATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 5329 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | ||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 5330 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 5389 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || ||||| ||||||||| || || || || || ||||| | ||| Sbjct 5390 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 5449 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | ||||||| | |||||||| || ||||| | ||||||||| || || Sbjct 5450 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 5509 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| |||| ||||||||||||| || |||||||||||||||||||| Sbjct 5510 CTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 5569 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 5570 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 5629 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || ||||| | | ||| || | ||||| || || | || || || | | Sbjct 5630 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 5688 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||| ||||| ||||| || ||||| || || ||||| || || | Sbjct 5689 GTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATGGTTATTTTG 5748 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| || |||||||| || ||||| ||||||||||| | Sbjct 5749 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAG 5808 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || || |||||||||||| | || | || ||||| || | Sbjct 5809 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTTA 5868 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 || | || |||||||| |||||||| || | |||| ||||||| ||||| |||| | Sbjct 5869 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 5928 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| ||||||||||||||||||||||| ||||||| Sbjct 5929 CCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCATGAACGTAACG 5988 Query 179819 CACACAACTTCCCACTCGACCTTGCTGC 179846 | || |||||||| || || || ||||| Sbjct 5989 CTCATAACTTCCCTCTAGATCTAGCTGC 6016 >seq25415 Length=1491 Score = 495 bits (548), Expect = 4e-135 Identities = 700/981 (71%), Gaps = 2/981 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || ||||| || ||| | || |||| ||| ||| | ||| Sbjct 396 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCC 455 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| | ||||| || ||||| ||||| || | || Sbjct 456 GTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCA 515 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || || || |||||| | Sbjct 516 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATAG 574 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | || ||| | | |||| ||||| ||||| | || || |||| || || Sbjct 575 TTTAGCACACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCGTTG 634 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || || |||| ||| || ||||| ||||| || |||| ||||| || Sbjct 635 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTTCACGGCGCTTTCGGACTAATAGG 694 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 || ||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 695 TTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTACGACCTTATAATGCAAT 754 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||| ||||| || || || ||||| ||||| || || || || || ||||| Sbjct 755 CGCATTCTCCGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCA 814 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 ||| ||||||||||||| || |||||| ||||| || || ||| ||||| | ||||| Sbjct 815 GTCTGGTTGGTTCTTTGCGCCAAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 874 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || ||||| | ||||| || |||||||||||||||||||| | Sbjct 875 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTGGGGT 934 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 | | || | || |||||| || || ||||| | || || || || || | | ||| Sbjct 935 ATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGA 994 Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709 |||||| || ||||| || || ||| ||| | |||| |||| || |||||||| Sbjct 995 AGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTA 1054 Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 1055 TTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 1114 Query 180770 GCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTAT 180829 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || | Sbjct 1115 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 1174 Query 180830 TGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAG 180889 ||| | | ||||| || || || || ||||| || || ||||| ||| || ||| | Sbjct 1175 TGGAGTAGTCGGTCTAGCCCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCG 1234 Query 180890 AGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGG 180949 ||||| |||||||| || || ||||| ||||||||||| || || || || || ||||| Sbjct 1235 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGG 1294 Query 180950 ACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGA 181009 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 1295 TATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 1354 Query 181010 AGTTCTACCAAGAGGTAACGC 181030 |||||||| | || ||||| Sbjct 1355 GGTTCTACCCCGTGGAAACGC 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610130785132800