Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18889 720 0.0 seq22773 136 5e-27 seq19222 132 7e-26 >seq18889 Length=1054283 Score = 720 bits (798), Expect = 0.0 Identities = 1342/1956 (69%), Gaps = 27/1956 (1%) Strand=Plus/Plus Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 ||||||| ||||| || ||||||| | || |||| | | || ||||| || | Sbjct 963991 TATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTTAGGTCCTTCAGCAGATGTGGGT 964050 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 | || || ||||| || ||||| | ||||| || ||||| || || ||||| || | || Sbjct 964051 TTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 964110 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | || ||||| || || || ||||| || || || || || |||||||| |||| || Sbjct 964111 CGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAACA 964170 Query 68831 ATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAA 68890 | | || || || | ||| ||| | || || || || || | ||||| ||||| | Sbjct 964171 ACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 964230 Query 68891 GATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATC 68950 | |||| || || | ||| | |||||||| ||||| || |||| | || | Sbjct 964231 GCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCAGAATGCCCCTACTCACTGGGGAGC 964290 Query 68951 CATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCAC 69010 | ||||| |||||||| || |||| ||| || | || || |||||||| | ||| Sbjct 964291 CTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGCCTCCAGGGCAG 964350 Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATG 69070 | || || || ||||| || |||| |||| || || ||||| ||| || |||| Sbjct 964351 CATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGAACTTTCAAATG 964410 Query 69071 GATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTAT 69130 ||||| | | || || || |||||||| | ||||| || || || || || || || | Sbjct 964411 GATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATCCCAATTGGCCTGT 964470 Query 69131 GTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 69190 | | ||| |||||| | || ||||| |||| || || || ||||| || || || |||| Sbjct 964471 GGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCAATGATCTTAT 964530 Query 69191 TAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCAT 69250 | ||||||| || | ||||||| || || || |||||||| | | Sbjct 964531 TGAGATTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAATCAAAGGTGCGTT 964590 Query 69251 CTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 || ||||| |||| || || || | || || | ||||| || ||||| |||| Sbjct 964591 CTGGAGTAACATACATGTTGAGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTT 964650 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 ||| ||| | | ||||| || || | ||||| |||||||| || |||| ||| | Sbjct 964651 TGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCT 964710 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 |||| |||||||| |||||||||| || ||||| | || | || || || ||||| Sbjct 964711 GCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTG 964770 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 ||||||| || || || | | ||| || | ||| || | || ||| || || Sbjct 964771 TCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGCTTC--ACTCT 964828 Query 69488 TCTCT--TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 | || | ||||||| |||| || ||| || || || || |||||| |||||||| Sbjct 964829 ACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAA 964888 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCAT 69605 ||||| || ||| | ||||||||||| ||||| | | | | | |||| ||||| Sbjct 964889 CCCAGGGCACTCACTGGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCAT 964948 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTC 69664 || || || || ||||| || || ||| ||||| |||| | || | || || || | Sbjct 964949 GAACAGGTCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTAC 965007 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || || || ||||| || | | |||| | |||||||| || | || | Sbjct 965008 CAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAA 965067 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | | |||||||||||||| || || || || | || | |||||||| || | Sbjct 965068 TGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGT 965127 Query 69785 AGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTC 69844 | |||||||||||||| | || |||||| || |||||||||||||||| ||| ||||||| Sbjct 965128 ACACTCTCAGCATCGGCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTC 965187 Query 69845 CTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAG 69904 || ||| | |||| |||| | || ||| || |||||||| ||||||||| |||| Sbjct 965188 CTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAG 965247 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 |||| |||||| ||||||||| || || || ||||| ||||| ||||| || || | Sbjct 965248 CACATTGTTTCAGTGTGTCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGA 965307 Query 69965 AACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 | ||||| || | || | ||| |||| || || || || | || ||||| || ||| Sbjct 965308 AGCAGCTGGAGAGCTGGGGTCTGT-TAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGA 965366 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || ||||| ||||| ||||| || ||||| |||| |||||||| | | Sbjct 965367 GTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAGAGTTG 965426 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || || | ||| | ||| ||||| || || || || |||| ||| Sbjct 965427 TGGATTCCGACAGCTACTCTCATGAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTG 965486 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 ||||||| || ||| || || || |||||||| ||||| | ||||| ||||| || Sbjct 965487 ATTTTCAGCAAGTAAGAGCGCTCTAGCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCC 965546 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTA--ACTATATCCA--- 70258 || || ||||| ||| |||| || || || | | |||| | || | ||| | Sbjct 965547 CTATCATAAATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAAGATCTAGGG 965604 Query 70259 TAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGA 70315 | | | || ||||| || || || || || |||| |||||| ||||||| || Sbjct 965605 TGTC--TTGG-GAGATCATGGGGGAGTGGCGCTT---ATTTAAAGGATTGACATAGTGGA 965658 Query 70316 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGG 70375 | | ||| ||||| || ||||| || | || || || || || || | |||||| | | Sbjct 965659 ACAGATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGATTTGACACAG 965718 Query 70376 CTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTT 70435 | |||| || || || || ||||| || || || | || || || || || || | Sbjct 965719 CAATTCGTGCAGCCAGGATGGCATAATCTGGGTGCTTCGTGGTCAGTGTGGCAGCAATCT 965778 Query 70436 CCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTT 70495 | ||||| | || || | || | ||| || |||||| | || || ||||| || || | Sbjct 965779 CTGCAGCAAGTGTGTCCAGCTCCACAGTGGTCACTCCGCTGTACAGACCTTGGATCACCT 965838 Query 70496 TCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAA 70555 |||| | |||| | || || | || || | || || |||||||| | || | Sbjct 965839 TCATCGTGATTTGTGTGGGGTCCACAAACTCCGCATTGAGCCCATAACAGAGCTTCTGGA 965898 Query 70556 TACGAGATGTAATTTTATCAAACATAACATTCTCCT 70591 | ||||| || |||||||||||||| || ||||| Sbjct 965899 TTCGAGAGGTGATTTTATCAAACATGACGCGCTCCT 965934 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || || ||||| || || | |||| ||| |||| || || |||||||||| Sbjct 963700 TCCAACCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 963759 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||||| || || |||||| | || || | || || ||||| || | | | ||| Sbjct 963760 TTAGGGATTGGCTCTGGTCGATGTAGGCACCGCGGTCGGCAGCCATCTTGAGTACAGTCT 963819 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || | ||||||||| Sbjct 963820 TCTGTGATATTTCCCAAACTGTTTTATATAACTGCTTTAAATCATCTGG 963868 >seq22773 Length=730387 Score = 136 bits (150), Expect = 5e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || ||| |||||||||||||||||| || || ||||||||||||| || ||||| || Sbjct 299783 GAGCCAGCATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAA 299842 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| | |||||||| || || ||||||| | ||||||| || || ||| ||| || Sbjct 299843 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCA 299902 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||||||| | | ||||| || || || || | |||||||| || || || |||||| Sbjct 299903 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGT 299962 Query 69127 CTATG 69131 || || Sbjct 299963 CTGTG 299967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||| || ||||||||||||||||| || || ||||| ||| Sbjct 301366 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTGAACCATTTCTCTGAGAGCAGGTTG 301425 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || ||||| |||| || || || | |||||| || | || || | ||| | | Sbjct 301426 TAGGTCTCAATGGCTGCGTCCATGTCTTGTTTATGAATCCCCACAGCCACTCTCATGAGC 301485 Query 70111 ATATGCTGAGG 70121 |||||||| || Sbjct 301486 ATATGCTGGGG 301496 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| | Sbjct 300724 ACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTGC 300783 Query 69655 TCTTCATTTCCTGTAttttt-tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 || || || || || ||||| |||||| || || ||||| | | |||| |||||||||| Sbjct 300784 TCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATGG 300842 Query 69714 TTCTAGATA 69722 || || || Sbjct 300843 CTCGAGGTA 300851 >seq19222 Length=928746 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||| | || || |||||||||||||| | ||||| Sbjct 773895 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 773836 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | ||||||||||| |||||||| ||||| || || ||||| |||||||||| Sbjct 773835 TCAGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 773776 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| ||| || || Sbjct 773775 CCACAATTCTTTCACC 773760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686685039458400