Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 111 1e-19
seq18889 93.3 4e-14
>seq4874
Length=535125
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | ||||| ||||| || || ||||||||| | | |||| |
Sbjct 502017 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 501958
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| |||||||| || || | || || | ||| ||||| || || | ||||| |||
Sbjct 501957 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTA 501898
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| ||| | | || | |||||| ||| || || || || || ||
Sbjct 501897 TCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| || || |||||||||||||| ||||||
Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATA 501802
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | ||||| ||||| || || ||||||||| | | |||| |
Sbjct 502245 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502186
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || |||||| | || || | ||| ||||| || || | || || ||
Sbjct 502185 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502126
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| |||| | |||| | ||||| ||| || || || ||||| ||
Sbjct 502125 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 502066
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || || || |||||||||||||| ||||||
Sbjct 502065 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502030
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | ||||| ||||| || || ||||||||| | | |||| |
Sbjct 502473 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502414
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || |||||| | || || | ||| ||||| || || | || || ||
Sbjct 502413 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502354
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| |||| | |||| | ||||| ||| || || || ||||| ||
Sbjct 502353 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 502294
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || || || |||||||||||||| ||||||
Sbjct 502293 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502258
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | || || ||||| || || ||||||||| | | |||| |
Sbjct 502701 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502642
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || |||||| | || || | ||| ||||| || || | || || ||
Sbjct 502641 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502582
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| |||| | |||| | |||||| ||| || || || ||||| ||
Sbjct 502581 TCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATG 502522
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || || || |||||||||||||| ||||||
Sbjct 502521 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502486
Score = 96.9 bits (106), Expect = 3e-15
Identities = 168/242 (69%), Gaps = 2/242 (1%)
Strand=Plus/Minus
Query 27009 TCATAA-TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAA 27066
|||||| ||| || || || | || |||| || | ||| | || || ||||| || |
Sbjct 502955 TCATAAATTACTGGCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGA 502896
Query 27067 TATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCT 27126
| |||||||| | | |||| | ||||| ||||| || ||||| | || || | ||
Sbjct 502895 TGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCT 502836
Query 27127 GTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGT 27186
| ||||| || || | || || || || ||||||| |||| | |||| | ||||
Sbjct 502835 GCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGT 502776
Query 27187 CTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246
| ||| || || || ||||| || | || || || || |||||||||||||| ||||
Sbjct 502775 CACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCA 502716
Query 27247 TA 27248
||
Sbjct 502715 TA 502714
>seq18889
Length=1054283
Score = 93.3 bits (102), Expect = 4e-14
Identities = 258/395 (65%), Gaps = 3/395 (1%)
Strand=Plus/Plus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
|| || || ||||||||||| | ||||| | ||| | ||| |||| |||||| |||
Sbjct 964893 GGGCACTCACTGGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAAC 964952
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722
| || || | ||||| || || || || |||| || | | ||| ||| |||| |
Sbjct 964953 AGGTCAGGGATCCATAGGGCATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTG 965012
Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782
| || |||| | | |||||| || | || ||||| || ||||| || | ||
Sbjct 965013 TTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCA 965072
Query 131783 ATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839
| || || || ||| || ||||| | |||| || | |||||||||| ||
Sbjct 965073 AAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACT 965132
Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899
| || ||| ||| | | ||| || | ||| ||||| || | |||||| || || |
Sbjct 965133 CTCAGCATCGGCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTT 965192
Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959
| ||| || | ||| | ||||| ||||| | |||||||||| || || |||
Sbjct 965193 GATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACAT 965252
Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994
| | || |||| ||| || || || | ||||||
Sbjct 965253 TGTTTCAGTGTGTCATAAATGCCATCAATGCTGTC 965287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424799438178720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |