Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4874 111 1e-19 seq18889 93.3 4e-14 >seq4874 Length=535125 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | ||||| ||||| || || ||||||||| | | |||| | Sbjct 502017 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 501958 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || | || || | ||| ||||| || || | ||||| ||| Sbjct 501957 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTA 501898 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | | || | |||||| ||| || || || || || || Sbjct 501897 TCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| || || |||||||||||||| |||||| Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATA 501802 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | ||||| ||||| || || ||||||||| | | |||| | Sbjct 502245 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502186 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || |||||| | || || | ||| ||||| || || | || || || Sbjct 502185 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502126 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | |||| | ||||| ||| || || || ||||| || Sbjct 502125 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 502066 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || |||||||||||||| |||||| Sbjct 502065 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502030 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | ||||| ||||| || || ||||||||| | | |||| | Sbjct 502473 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502414 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || |||||| | || || | ||| ||||| || || | || || || Sbjct 502413 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502354 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | |||| | ||||| ||| || || || ||||| || Sbjct 502353 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 502294 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || |||||||||||||| |||||| Sbjct 502293 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502258 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || ||||| || || ||||||||| | | |||| | Sbjct 502701 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 502642 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || |||||| | || || | ||| ||||| || || | || || || Sbjct 502641 TCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 502582 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | |||| | |||||| ||| || || || ||||| || Sbjct 502581 TCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATG 502522 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || |||||||||||||| |||||| Sbjct 502521 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 502486 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 27009 TCATAA-TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAA 27066 |||||| ||| || || || | || |||| || | ||| | || || ||||| || | Sbjct 502955 TCATAAATTACTGGCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGA 502896 Query 27067 TATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCT 27126 | |||||||| | | |||| | ||||| ||||| || ||||| | || || | || Sbjct 502895 TGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCT 502836 Query 27127 GTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGT 27186 | ||||| || || | || || || || ||||||| |||| | |||| | |||| Sbjct 502835 GCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGT 502776 Query 27187 CTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 | ||| || || || ||||| || | || || || || |||||||||||||| |||| Sbjct 502775 CACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCA 502716 Query 27247 TA 27248 || Sbjct 502715 TA 502714 >seq18889 Length=1054283 Score = 93.3 bits (102), Expect = 4e-14 Identities = 258/395 (65%), Gaps = 3/395 (1%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || || || ||||||||||| | ||||| | ||| | ||| |||| |||||| ||| Sbjct 964893 GGGCACTCACTGGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAAC 964952 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || || | ||||| || || || || |||| || | | ||| ||| |||| | Sbjct 964953 AGGTCAGGGATCCATAGGGCATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTG 965012 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | || |||| | | |||||| || | || ||||| || ||||| || | || Sbjct 965013 TTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCA 965072 Query 131783 ATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839 | || || || ||| || ||||| | |||| || | |||||||||| || Sbjct 965073 AAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACT 965132 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899 | || ||| ||| | | ||| || | ||| ||||| || | |||||| || || | Sbjct 965133 CTCAGCATCGGCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTT 965192 Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959 | ||| || | ||| | ||||| ||||| | |||||||||| || || ||| Sbjct 965193 GATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACAT 965252 Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | || |||| ||| || || || | |||||| Sbjct 965253 TGTTTCAGTGTGTCATAAATGCCATCAATGCTGTC 965287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424799438178720