Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq18889 219 5e-52 seq22773 100 4e-16 seq19222 82.4 1e-10 >seq18889 Length=1054283 Score = 219 bits (242), Expect = 5e-52 Identities = 934/1444 (65%), Gaps = 54/1444 (4%) Strand=Plus/Plus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||| ||||| |||||| || | ||| ||| | ||||||||| | ||||| | Sbjct 964049 GTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGC 964108 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 ||| | | | ||||| || || | ||||| || ||||||||||| ||||| || |||| Sbjct 964109 TTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAA 964168 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847 ||| || ||||| | | ||| | | || ||||| || | | |||||| | Sbjct 964169 CAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCA 964228 Query 110848 GTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGAAGCA--CCCCTTGGGACGCG 110902 | |||| || |||||| |||||||||| | || || | ||||| || | Sbjct 964229 G---AGCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCAGAATGCCCCTACTCACTGG 964285 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 |||| || | || ||||| | || | ||| ||||| || ||||| |||||| Sbjct 964286 GGAG--CCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGCCTCC 964343 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 |||| || | || |||||||||||||| | ||||| | || ||||||| ||| Sbjct 964344 AGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGCTGGGCTTCA---GAA 964400 Query 111023 ---TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||||| || || | || || |||| || ||||| || ||||| | ||| Sbjct 964401 CTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATCCCA 964460 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTG 111136 || || ||||| ||| | || || || | | | ||| || || || | || || Sbjct 964461 ATTGGCCTGTGGCGCTTGTTTGAATT---CTCTGCTTCAGGAACTGGGTAGTAGTTAATG 964517 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCA 111193 ||||||| || |||||| | ||||| |||| |||| | ||| |||| Sbjct 964518 TCAATGATCTTATTGAGATTTCTT---ACAATTACTTTAGTGACTGAGGCAAGCTTTTTG 964574 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 ||||||| ||||| ||| | | |||||| | || || ||||| ||||| || Sbjct 964575 AAATCAAAGGTGCGT---TCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCAAGTTA 964631 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || || || ||||| || ||| ||||| | ||| || || || ||||| | Sbjct 964632 CAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCAT 964691 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || || |||||||||| |||||||||||| |||| || ||||| ||||| | |||| Sbjct 964692 TTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATG 964751 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGG 111432 || || || ||||| || ||||| || | | || || | ||| || | | | | || | Sbjct 964752 TAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTG 964811 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT- 111491 || || || | | |||||| || || |||||| || |||||||||| Sbjct 964812 ACCACCCGC-TTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAACTCCTC 964870 Query 111492 CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTGACCA 111550 | |||| | | || | ||| | || | || ||||| | | |||||| | || Sbjct 964871 CCCCCAACAC-TCATCCA-ACCCAGGGCACTCACTGGGACACATCAAAGACCA--GTCCT 964926 Query 111551 CCT--TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | | || || | ||||||||| ||||| || ||||| |||| | ||||| |||| Sbjct 964927 GGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGAGGTCTC 964986 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCC 111667 || ||| || | ||| ||| || | | |||||| || || | | ||| Sbjct 964987 GCGCCCTCTGCTCCTCTTTACCAGTGTT-CTTCTTCAGCTCAAGAAAGTCAAACACATCA 965045 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTT 111724 |||||||||||| | || | || | | ||| ||| | ||| |||| | Sbjct 965046 AAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCC 965105 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 |||||||| || ||| ||| | || | ||||| || | || ||||| ||| | |||| Sbjct 965106 ACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTACCA 965165 Query 111785 TTTGTCCCCCGAATACGAGATTTATTG--GCTCTCACATCATGGATGTGC-ATCCCAATA 111841 ||||| || ||| | | || || | ||| | | || | ||| | ||||| Sbjct 965166 TTTGTTCCAGCAAT--GTAACTTCCTGTTGATCTAATA-CAGCTAACTGCTACACCAATC 965222 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || || || | || ||||| | ||||| | | || || |||| || || | || Sbjct 965223 CCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATG 965282 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||| ||||| |||| | |||||||| ||||| | ||| ||||| || || || Sbjct 965283 CTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCG 965342 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 112020 ||||| || || || | || ||| ||||| || | | |||| | || ||| ||||| Sbjct 965343 TTGAACAGAGTGGGAGAGGCATGAGTGAAC-CACTTCTCAGACAGCAGGTTGTAGGTCTC 965401 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 | | | | ||| || || |||||| |||| || || | ||||| ||||| ||| Sbjct 965402 AATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTG 965461 Query 112081 TGGG 112084 |||| Sbjct 965462 TGGG 965465 >seq22773 Length=730387 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||| |||| ||| || || || | |||| ||| || || || Sbjct 300283 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCC 300342 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | ||||| ||||| |||||| | ||||| ||||| |||||||||||||| || || || Sbjct 300343 TAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACC 300402 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| |||||||| | | ||| || | ||| Sbjct 300403 CGTCTCTGTCTGTGACTCAATAATGGCATACCA 300435 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACC---TTGGGCTTCAGCCAATTCACAGCTCGCC 110959 ||||| || || | |||||||| | || |||||| ||| | ||||||||| ||| Sbjct 299780 GGAGAGCCAGCATATGTTTCATAAGGTCCATCTTGGGC---AGCTAGTTCACAGCTGGCC 299836 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 |||| | || | ||| ||||| ||||| || | || | | || ||| || || Sbjct 299837 TCCAAAGCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCA 299896 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||||| || || | ||| || | ||||| ||||| |||||||| | ||| Sbjct 299897 CTTTCAAATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCA 299956 Query 111080 ATAGGTCTGTGTCGCATATTAGAC 111103 ||||||||||| ||||| |||||| Sbjct 299957 ATAGGTCTGTGGCGCATGTTAGAC 299980 >seq19222 Length=928746 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/123 (77%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||| | ||||||||||| | | ||| | || || ||||| ||||||| ||| Sbjct 773895 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGGCCAGGCATTAGACCCCTCTTT 773837 Query 122737 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| ||||||||| || ||| || || || |||||||| || ||||| ||| ||||| Sbjct 773836 TTCAGCCAATAAATGGCAGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 773778 Query 122796 CGC 122798 || Sbjct 773777 TGC 773775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627827418576000