Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18889 147 3e-30 seq20084 96.9 4e-15 seq22773 86.0 8e-12 >seq18889 Length=1054283 Score = 147 bits (162), Expect = 3e-30 Identities = 459/702 (65%), Gaps = 19/702 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||||||||| || | ||||| ||||||||| Sbjct 964089 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAG 964148 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || |||| | |||||||| | | ||| | || ||| ||| Sbjct 964149 GCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCC 964208 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTG 118357 || || ||| ||| |||| || |||| || | ||| |||||| || | || Sbjct 964209 TTAAGCAGCTTCC-AGTCCCAG---AGCTCAGTGGGCACCTTTTCCCACATGTCGTATTG 964264 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 || || || | |||| || || |||||||||| || || || || || Sbjct 964265 CAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGC 964324 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 ||| ||| |||| ||||| ||||| || | || || |||||||| || | ||||| Sbjct 964325 CAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAG 964384 Query 118478 TGCCTTGGCCTCGTCGGAA---TCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGA 118533 || ||| || ||| ||||| | || ||| | || || |||| || | Sbjct 964385 CAGCTGGGCTTCA---GAACTTTCAAATG-GATAACGCATGAGGATGAAGGCATCTGCAA 964440 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA 118593 |||| || ||||||| |||||||| | || | | | || || ||| || | Sbjct 964441 GACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 964500 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | || || | || | || || | | |||| |||||| | | || || |||| | Sbjct 964501 CTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTG 964560 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 |||||||| | ||||||| |||| ||| | | |||||| | || || | Sbjct 964561 AGGCAAGCTTTTTGAAATCAAAGGTGCGT---TCTGGAGTAACATACATGTTGAGAGCAA 964617 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 |||| |||| ||||| || | ||||| || || ||||| | ||| || |||| Sbjct 964618 TTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGC 964677 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||||||| | || ||||||||||| |||| || || ||| ||||||| |||| Sbjct 964678 ACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCAT 964737 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 | ||||| | |||||| || || ||||| || || || |||| Sbjct 964738 CTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACT 964779 >seq20084 Length=15297 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| ||| ||| ||||| || ||||| ||| || ||||| || || || |||| Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||||||||| || || || |||||||||||||||||||||||| || || | Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 12821 CCACCACACGCTC 12833 >seq22773 Length=730387 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| | ||||| | |||||||||| || | ||| ||||| || ||| Sbjct 299251 TAAATGTTGCTGGTGTAAGCCTCAATGGACTCATTGTTGCCGAGGATCTGGGCAGTAGAG 299310 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||| |||||||| Sbjct 299311 GCTGTGGGCATTGGGGCCAGGAGGAGGCTGTT 299342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618233744733600