Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq18889 224 1e-53 seq20084 95.1 1e-14 >seq18889 Length=1054283 Score = 224 bits (248), Expect = 1e-53 Identities = 965/1498 (64%), Gaps = 48/1498 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| ||||| | || || |||| || || || || ||| | | Sbjct 965465 CCCACAGCACATGCTCATGAGAGTAGCTGTCGGAATCCACAACTCTGATATAGATGCAGC 965406 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||| | | || ||||| ||| || | || || || | Sbjct 965405 CATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGT 965347 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || |||||||| | ||||| |||||||| | |||| ||||| | Sbjct 965346 TCAACGCAGGCACTAACAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATG 965287 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | || || |||| || || | | ||||| | ||||| || | || | Sbjct 965286 ACAGCATTGATGGCATTTATGACACACTGAAACAATGTGCTCTTATCTCTAAATCTGCAG 965227 Query 104460 GGGGTATTGGGAT-GCACATCCATGATGTGAGAGC--CAATAAATCTCGTATTCGGGGGA 104516 | || ||||| | ||| | || | | ||| | || || | | ||| || | Sbjct 965226 GAGGGATTGGTGTAGCAGTTAGCTG-TATTAGATCAACAGGAAGTTAC--ATTGCTGGAA 965170 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 |||||||| | ||| ||||| || | || ||||| | || | ||| ||| || |||| Sbjct 965169 CAAATGGTAACTCAAATGGTCTTGTGCCGATGCTGAGAGTGTACAACAACACTGCACGCT 965110 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | |||| ||| | ||| ||| | | || | || | |||||||||| Sbjct 965109 ATGTGGACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATTTACTTGGAGCCATGGC 965050 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || ||| | | || || |||||| || ||| ||| | |||||| | || Sbjct 965049 ACTTTGATGTGTTTGACTTTCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGG 964990 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 || || ||||||| || || ||||| || || || |||||||||||||| || | | Sbjct 964989 CGCGAGACCTCTTCTATGCCCTATGGATCCCTGACCTGTTCATGAAGAGAGTGGAAAACA 964930 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| | | ||||| || | || ||||| | || || | ||| Sbjct 964929 ACCAGGACTGGTCTTTGATGTGTCCCAGTGAGTGC-CCTGGGTTGGATGAGTGTTGGGGG 964871 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 ||||||||||| || |||||| || || | || ||| | | || ||| ||| Sbjct 964870 -GAGGAGTTTGAGAAGCTGTACACACGATATGAACAGGAGGGTAGAGTGAA-GCG--GGT 964815 Query 104872 GC-CA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | || ||| | |||||| | || || | ||||||| || || || || ||||| Sbjct 964814 GGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACAGAAACGGGAACACC 964755 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 |||||| | |||||||| ||||||||| |||||||| || |||||||||| || Sbjct 964754 TTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCAT 964695 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 ||| | || | || || || || |||| | |||| ||||||||| || || Sbjct 964694 CAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAAGTAGCCGT 964635 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 |||||| | || ||||| |||||| || |||||| |||||| | || ||||| Sbjct 964634 CTGTAACTTGGCCTCAATTGCTCTCAACATGTATGTTACTCCAGA---ACGCACCTTTGA 964578 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAA---ACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || |||| || | ||| || ||| | ||| | ||| || || | | || Sbjct 964577 TTTCAAAAAGCTTGCCTCAGTCACTAAAGTAATTGTAAG---AAATCTCAATAAGATCAT 964521 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| | || | ||||| ||| || || || || | | | ||| | ||||| Sbjct 964520 TGACATTAACTACTACCCAGTTCCTGAAGCAGAGAATTCAAACAAGCGCCACAGGCCAAT 964461 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA--- 105282 ||| ||||||| |||||||| || |||| ||||| || || | ||||||| Sbjct 964460 TGGGATCGGTGTGCAGGGTCTTGCAGATGCCTTCATCCTCATGCGTTATCCATTTGAAAG 964401 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 ||| || ||| || | ||| | || ||||| ||||| || | || || || Sbjct 964400 TTCTGA---AGCCCAGCTGCTGAATATCCAGATCTTTGAAACCATCTACTATGCTGCCCT 964344 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 ||||| || | ||||||||||| || || || ||||| || | || || || Sbjct 964343 GGAGGCAAGCTGCGAGTTGGCAGAAAAGGACGGGCCTTATGAGACATACCCAGGCTCCCC 964284 Query 105403 AGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGGAAGGTGAGACCA---AGCTTCAC 105457 || | | ||||| | || |||| || ||||||||| | | ||| |||| | Sbjct 964283 AG--TGAGTAGGGGCATTCTGCAATACGACATGTGGGAAAAGGTGCCCACTGAGCT---C 964229 Query 105458 TACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | |||||| ||||| || ||||| || | | ||| | | ||||| || | Sbjct 964228 TGGGACTGG-AAGCTGCTTAAGGAGAAGATTGCTAAACACGGTGTGAGGAACAGCCTGTT 964170 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 |||| || ||||| ||||||||||| || ||||| | || || ||||| | | | || Sbjct 964169 GTTGGCCCCTATGCCCACAGCCTCCACAGCGCAAATACTTGGCAACAATGAGTCCATCGA 964110 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 | ||||||| | |||||||| | ||| ||| | ||||||||| |||||| || Sbjct 964109 AGCCTACACCAGCAACATCTACACACGCAGAGTCCTGTCTGGAGAGTTTCAGATTGTAAA 964050 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 105694 | ||||| || | ||||| | || || || ||| | |||| |||||| || Sbjct 964049 CCCACATCTGCTGAAGGACCTAACTGAACGGGGGCTGTGGAACGAGGAGATGAAGAAT 963992 >seq20084 Length=15297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| |||||||||||||| || ||| ||| |||| ||||| Sbjct 12821 GCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCTGGCTG 12762 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 ||||| ||||| || ||||| || || ||||||||||| |||||| || |||||| Sbjct 12761 AAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGCGACGAG 12702 Query 94936 GGACT 94940 | ||| Sbjct 12701 GTACT 12697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583070802794400