Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq18889 123 3e-23 seq20084 105 7e-18 seq22773 84.2 2e-11 >seq18889 Length=1054283 Score = 123 bits (136), Expect = 3e-23 Identities = 338/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| || || | || || || |||||| Sbjct 965401 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAC 965342 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| | || ||||| ||||| |||| ||||||||||||||| Sbjct 965341 GCAGGCACTAACAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGC 965282 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| ||||| || || || || || | || || | ||||| || | | || || Sbjct 965281 ATTGATGGCATTTATGACACACTGAAACAATGTGCTCTTATCTCTAAATCTGCAGGAGGG 965222 Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || || | || | ||| ||| | || | || | || ||| || || Sbjct 965221 ATTGGTGTAGCAGTTAGCT---GTATTAGATCAACAGGAAGTTACATTGCTGGAACAAAT 965165 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | | ||| | || || ||||| | || | ||||||||| || | || || Sbjct 965164 GGTAACTCAAATGGTCTTGTGCCGATGCTGAGAGTGTACAACAACACTGCACGCTATGTG 965105 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || ||| ||||| ||| | || ||||| ||| | |||||||||||| Sbjct 965104 GACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATTTACTTGGAGCCATGGCACTTT 965045 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 || || | || || || || ||| |||| ||| | |||||| | | || Sbjct 965044 GATGTGTTTGACTTTCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCGCGA 964985 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||||||||| ||| | ||||| || ||||| |||||| ||| || || || || | Sbjct 964984 GACCTCTTCTATGCCCTATGGATCCCTGACCTGTTCATGAAGAGAGTGGAAAACAACCAG 964925 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677 || ||| ||||||| || || |||||||| Sbjct 964924 GACTGGTCTTTGATGTGTCCCAGTGAGTGCCCTGG 964890 >seq20084 Length=15297 Score = 105 bits (116), Expect = 7e-18 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| || |||||||||||||| |||||| || ||||||||||| Sbjct 12821 GCCTTTGC-TGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCTGGCT 12763 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || || || ||||| ||||| || |||| |||||||||||| || || ||| ||||| Sbjct 12762 GAAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGCGACGA 12703 Query 60110 GG 60111 || Sbjct 12702 GG 12701 >seq22773 Length=730387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || |||||||| |||| |||||||||||||||||||||||||| ||||| || | ||| Sbjct 301270 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGCATTGAGGGCATTTACGACACCTTGAAG 301211 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 |||| || | |||||| || | | ||||| || || || Sbjct 301210 CAGTGTGCTCTCATCTCTAAATCTGCTGGGGGCATTGGAAT 301170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548346118046400