Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 123 3e-23
seq20084 105 7e-18
seq22773 84.2 2e-11
>seq18889
Length=1054283
Score = 123 bits (136), Expect = 3e-23
Identities = 338/515 (66%), Gaps = 6/515 (1%)
Strand=Plus/Minus
Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225
||||| ||| ||||| || |||||| ||||| || || | || || || ||||||
Sbjct 965401 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAC 965342
Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285
|| || || |||| || ||| | || ||||| ||||| |||| |||||||||||||||
Sbjct 965341 GCAGGCACTAACAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGC 965282
Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345
||||| ||||| || || || || || | || || | ||||| || | | || ||
Sbjct 965281 ATTGATGGCATTTATGACACACTGAAACAATGTGCTCTTATCTCTAAATCTGCAGGAGGG 965222
Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402
|| || | || | ||| ||| | || | || | || ||| || ||
Sbjct 965221 ATTGGTGTAGCAGTTAGCT---GTATTAGATCAACAGGAAGTTACATTGCTGGAACAAAT 965165
Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462
|| | | ||| | || || ||||| | || | ||||||||| || | || ||
Sbjct 965164 GGTAACTCAAATGGTCTTGTGCCGATGCTGAGAGTGTACAACAACACTGCACGCTATGTG 965105
Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522
|||| || ||| ||||| ||| | || ||||| ||| | ||||||||||||
Sbjct 965104 GACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATTTACTTGGAGCCATGGCACTTT 965045
Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582
|| || | || || || || ||| |||| ||| | |||||| | | ||
Sbjct 965044 GATGTGTTTGACTTTCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCGCGA 964985
Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642
||||||||| ||| | ||||| || ||||| |||||| ||| || || || || |
Sbjct 964984 GACCTCTTCTATGCCCTATGGATCCCTGACCTGTTCATGAAGAGAGTGGAAAACAACCAG 964925
Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677
|| ||| ||||||| || || ||||||||
Sbjct 964924 GACTGGTCTTTGATGTGTCCCAGTGAGTGCCCTGG 964890
>seq20084
Length=15297
Score = 105 bits (116), Expect = 7e-18
Identities = 98/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049
|| ||||| ||| ||||| || |||||||||||||| |||||| || |||||||||||
Sbjct 12821 GCCTTTGC-TGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCTGGCT 12763
Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109
|| || || ||||| ||||| || |||| |||||||||||| || || ||| |||||
Sbjct 12762 GAAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGCGACGA 12703
Query 60110 GG 60111
||
Sbjct 12702 GG 12701
>seq22773
Length=730387
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
|| |||||||| |||| |||||||||||||||||||||||||| ||||| || | |||
Sbjct 301270 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGCATTGAGGGCATTTACGACACCTTGAAG 301211
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353
|||| || | |||||| || | | ||||| || || ||
Sbjct 301210 CAGTGTGCTCTCATCTCTAAATCTGCTGGGGGCATTGGAAT 301170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548346118046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |