Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 138 1e-27
seq22108 98.7 1e-15
seq19222 89.7 6e-13
seq18801 86.0 7e-12
>seq18889
Length=1054283
Score = 138 bits (152), Expect = 1e-27
Identities = 459/706 (65%), Gaps = 10/706 (1%)
Strand=Plus/Minus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| || || || ||| | || || ||||||||||| || || || || ||| |
Sbjct 965377 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACTAACAGACCCCAGCTC 965318
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| |||||||||||| |||| |||||||||||| || || ||||| || || || ||
Sbjct 965317 TCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGACACACTG 965258
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443
|| | ||||| | ||||| || | | || || || ||| | || | ||| |
Sbjct 965257 AAACAATGTGCTCTTATCTCTAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGTA-- 965200
Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503
| | | | || | || || || || || | | |||| | |||||
Sbjct 965199 -TTAGATCAACAGGAAGTTACATTGCTGGAACAAATGGTAACTCAAATGGTCTTGTGCCG 965141
Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563
||||| | || | ||||||||| || || || || |||| ||||| || || |
Sbjct 965140 ATGCTGAGAGTGTACAACAACACTGCACGCTATGTGGACCAAGGTGGCAATAAACGACCG 965081
Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623
|| | || ||||| ||| | ||||| |||||| || | | || ||||| ||||||
Sbjct 965080 GGTGCCTTTGCCATTTACTTGGAGCCATGGCACTTTGATGTGTTTGACTTTCTTGAGCTG 965021
Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683
||| ||| | || ||| | | || ||||| || || || |||||
Sbjct 965020 AAGAAGAACACTGGTAAAGAGGAGCAGAGGGCGCGAGACCTCTTCTATGCCCTATGGATC 964961
Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743
|| ||||| |||||| | | ||||| || || |||| |||| ||||||| || |
Sbjct 964960 CCTGACCTGTTCATGAAGAGAGTGGAAAACAACCAGGACTGGTCTTTGATGTGTCCCAGT 964901
Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-T 53801
|||||||| || | | | |||| | || ||||||||| | || |||| | ||| |
Sbjct 964900 GAGTGCCCTGGGTTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTA-CACACGAT 964843
Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861
| | | |||| | ||| | ||||||||| | |||| ||| |||| |||
Sbjct 964842 ATGAACAGGAGGGTAGAGTGAAGCGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCA 964783
Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921
| || ||| || |||||||| || ||||||| ||||| ||| | ||| ||
Sbjct 964782 TAGAGTCTCAGACAGAAACGGGAACACCTTACATGTTGTACAAAGATGCCTGTAACAGGA 964723
Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
|||| |||||| |||| | ||| |||||||| || ||||| ||
Sbjct 964722 AGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTG 964677
>seq22108
Length=2356174
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
||||||||| || |||| |||||||| |||||||||||| || || ||||| || ||
Sbjct 902778 AGTGAAAATATATCGAGGGCTTGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTG 902837
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| || | |||||| |||| ||||||| ||| ||||| |||||||||||
Sbjct 902838 ACCAAGAGGTTGCAAGAGATTCAAGTTGTTGCTGCCAACAAAATTTTGAGCCAA 902891
>seq19222
Length=928746
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||| | | |||||||||||| || || | ||| |||
Sbjct 773893 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTTTC 773834
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||| | |||||| ||||| ||| |||||| || || || ||| ||||| ||
Sbjct 773833 AGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATGCC 773774
Query 74892 ACAA 74895
||||
Sbjct 773773 ACAA 773770
>seq18801
Length=350707
Score = 86.0 bits (94), Expect = 7e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087
||||||||||| || | |||||| || || ||||| || | || || ||||||||
Sbjct 170176 GTGAAGATGTAACGTGGGCTGGCAGCGTCTTTGCCTCCGTTGATGCGAGTACCAAACTGA 170235
Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
||||| |||| |||| ||| | |||||| ||||||||| ||||||||||| |||||
Sbjct 170236 CCCAGA-GGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCAC 170294
Query 152148 AATCGT 152153
|| ||
Sbjct 170295 GATGGT 170300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547037744388000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |