Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18889 138 1e-27 seq22108 98.7 1e-15 seq19222 89.7 6e-13 seq18801 86.0 7e-12 >seq18889 Length=1054283 Score = 138 bits (152), Expect = 1e-27 Identities = 459/706 (65%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || || ||| | || || ||||||||||| || || || || ||| | Sbjct 965377 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACTAACAGACCCCAGCTC 965318 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||| |||||||||||| || || ||||| || || || || Sbjct 965317 TCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGACACACTG 965258 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443 || | ||||| | ||||| || | | || || || ||| | || | ||| | Sbjct 965257 AAACAATGTGCTCTTATCTCTAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGTA-- 965200 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | | | | || | || || || || || | | |||| | ||||| Sbjct 965199 -TTAGATCAACAGGAAGTTACATTGCTGGAACAAATGGTAACTCAAATGGTCTTGTGCCG 965141 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | ||||||||| || || || || |||| ||||| || || | Sbjct 965140 ATGCTGAGAGTGTACAACAACACTGCACGCTATGTGGACCAAGGTGGCAATAAACGACCG 965081 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | || ||||| ||| | ||||| |||||| || | | || ||||| |||||| Sbjct 965080 GGTGCCTTTGCCATTTACTTGGAGCCATGGCACTTTGATGTGTTTGACTTTCTTGAGCTG 965021 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| ||| | || ||| | | || ||||| || || || ||||| Sbjct 965020 AAGAAGAACACTGGTAAAGAGGAGCAGAGGGCGCGAGACCTCTTCTATGCCCTATGGATC 964961 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | | ||||| || || |||| |||| ||||||| || | Sbjct 964960 CCTGACCTGTTCATGAAGAGAGTGGAAAACAACCAGGACTGGTCTTTGATGTGTCCCAGT 964901 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-T 53801 |||||||| || | | | |||| | || ||||||||| | || |||| | ||| | Sbjct 964900 GAGTGCCCTGGGTTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTA-CACACGAT 964843 Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 | | | |||| | ||| | ||||||||| | |||| ||| |||| ||| Sbjct 964842 ATGAACAGGAGGGTAGAGTGAAGCGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCA 964783 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 | || ||| || |||||||| || ||||||| ||||| ||| | ||| || Sbjct 964782 TAGAGTCTCAGACAGAAACGGGAACACCTTACATGTTGTACAAAGATGCCTGTAACAGGA 964723 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||| |||||| |||| | ||| |||||||| || ||||| || Sbjct 964722 AGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTG 964677 >seq22108 Length=2356174 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| |||||||| |||||||||||| || || ||||| || || Sbjct 902778 AGTGAAAATATATCGAGGGCTTGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTG 902837 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| || | |||||| |||| ||||||| ||| ||||| ||||||||||| Sbjct 902838 ACCAAGAGGTTGCAAGAGATTCAAGTTGTTGCTGCCAACAAAATTTTGAGCCAA 902891 >seq19222 Length=928746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||| | | |||||||||||| || || | ||| ||| Sbjct 773893 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTTTC 773834 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| | |||||| ||||| ||| |||||| || || || ||| ||||| || Sbjct 773833 AGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATGCC 773774 Query 74892 ACAA 74895 |||| Sbjct 773773 ACAA 773770 >seq18801 Length=350707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| || | |||||| || || ||||| || | || || |||||||| Sbjct 170176 GTGAAGATGTAACGTGGGCTGGCAGCGTCTTTGCCTCCGTTGATGCGAGTACCAAACTGA 170235 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | |||||| ||||||||| ||||||||||| ||||| Sbjct 170236 CCCAGA-GGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCAC 170294 Query 152148 AATCGT 152153 || || Sbjct 170295 GATGGT 170300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547037744388000