Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 167 3e-36
seq10742 163 3e-35
>seq4874
Length=535125
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || || ||||| |||||||| ||||| ||| | ||
Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| ||||||| || || ||||||||||| || ||||| ||||| |||
Sbjct 502547 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502606
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 502607 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502666
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || |||||||| || ||||| ||| ||||||| | |||||
Sbjct 502667 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 502713
Score = 167 bits (184), Expect = 3e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | ||
Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| ||||| |||
Sbjct 502775 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502834
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 502835 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 502894
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| || |||||||| || ||||| || ||||||| | ||||| ||
Sbjct 502895 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGTGGCCA 502944
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | ||
Sbjct 502031 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502090
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| ||||| |||
Sbjct 502091 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502150
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 502151 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502210
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||| || || ||||| ||| ||||||| | |||||
Sbjct 502211 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502257
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | ||
Sbjct 502259 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502318
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| ||||| |||
Sbjct 502319 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502378
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 502379 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502438
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||| || || ||||| ||| ||||||| | |||||
Sbjct 502439 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502485
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || || || || ||||| || ||||| |||||||| | ||
Sbjct 504409 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAACCCAGT 504468
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| |||| | || || || || ||||||||||| || ||||| ||| |||
Sbjct 504469 GACATGATTGAAAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCATTTCAG 504528
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
||| | || || ||||| || ||
Sbjct 504529 CAGAGACTGATCTTTGCCGGCAA 504551
>seq10742
Length=3397572
Score = 163 bits (180), Expect = 3e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || || ||||| || ||| | |||||||| || ||
Sbjct 2148903 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGT 2148844
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| |||| || |||||||| ||||| ||||| |||||||| || |||
Sbjct 2148843 GACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCAG 2148784
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || ||||| ||||||||||| || || |||| || || || | ||||| ||
Sbjct 2148783 CAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148724
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || || | |||||
Sbjct 2148723 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCT 2148686
Score = 159 bits (176), Expect = 4e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || || ||||| || ||| | ||||| || | ||
Sbjct 2148675 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGT 2148616
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || |||||||| ||||| || ||||| |||||
Sbjct 2148615 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAA 2148556
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || ||||| ||||||||||| || || |||| ||| ||||| ||||||| ||
Sbjct 2148555 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAAC 2148496
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
| |||||||||||||| || ||
Sbjct 2148495 ATTCAAAAGGAATCCACCCTCCA 2148473
Score = 152 bits (168), Expect = 6e-32
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || || || || || ||| | || |||||| | |
Sbjct 2149132 AATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAG 2149073
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| ||| ||||||| || || ||||| ||||| || || ||||| |||||
Sbjct 2149072 TGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGACCA 2149013
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || ||||||||||||||||| || || |||| || || || | ||||| ||
Sbjct 2149012 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAA 2148953
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || || | |||||
Sbjct 2148952 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCT 2148914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570124621387200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |