Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq10742 111 1e-19
seq4874 105 4e-18
>seq10742
Length=3397572
Score = 111 bits (122), Expect = 1e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | |||| |||||| ||||| ||| |||||||||||||| || |||||
Sbjct 2148449 CCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 2148508
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| || ||||| || || || | | ||||||||| || ||
Sbjct 2148509 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGG 2148568
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCA 34657
| ||||| ||||| |||| |||| || ||| | ||| ||||| | | | ||||
Sbjct 2148569 ATACCCTCTTTGTCCTGGATC-TTTGCCTTGACGTTTTCAATGGTGTCACTAGGT-TCCA 2148626
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| |||| || || || || || || | || || ||||| ||||||||
Sbjct 2148627 CCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
>seq4874
Length=535125
Score = 105 bits (116), Expect = 4e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || ||||||| || | |||||| || || || || ||||| || || ||
Sbjct 502029 CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 501970
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| ||||| || ||||| || | | ||| || || || ||
Sbjct 501969 AGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 501910
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| |||||||| ||| |||||| | |||||| | ||| ||||| | ||||||
Sbjct 501909 ATGCCCTCCTTATCTTGGATCTTG-GCTTTAACATTCTCAATAGTGTCGCTGGGCTCCAC 501851
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| | ||| || ||||| || || | ||||||||||| |||||||| |||
Sbjct 501850 CTCAAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 501799
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || ||||||| ||| | |||||| ||| || || || ||||| || || ||
Sbjct 502942 GCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 502883
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | |||||||| || || |||||||| || | | ||| || || || ||
Sbjct 502882 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 502823
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657
| || |||||||| |||||| | || ||| | ||| ||||| | |||||
Sbjct 502822 AATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTTTCAATGGTGTCACTGGGCTCCA 502764
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| |||| || || || || || || | ||||||||||| ||||||||
Sbjct 502763 CCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||||| || | |||||| || || || || ||||| || || ||
Sbjct 502257 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502198
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| || || ||||| || || | | ||| || || || ||
Sbjct 502197 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502138
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||||| | || ||| | ||| ||||| | ||||||
Sbjct 502137 ATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTTTCAATGGTGTCACTGGGCTCCAC 502079
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | ||||||||||| ||||||||
Sbjct 502078 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||||| || | |||||| || || || || ||||| || || ||
Sbjct 502485 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502426
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| || || ||||| || || | | ||| || || || ||
Sbjct 502425 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502366
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||||| | || ||| | ||| ||||| | ||||||
Sbjct 502365 ATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTTTCAATGGTGTCACTGGGCTCCAC 502307
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | ||||||||||| ||||||||
Sbjct 502306 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || ||||||| || | |||||| ||| || || || ||||| || || ||
Sbjct 502713 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 502654
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| || || ||||| || || | | ||| || || || ||
Sbjct 502653 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502594
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||||| | || ||| | ||| ||||| | ||||||
Sbjct 502593 ATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTTTCAATAGTGTCACTGGGCTCCAC 502535
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | ||||||||||| ||||||||
Sbjct 502534 CTCCAGAGTAATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314629639911980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |