Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq21827 517 1e-141
seq21636 143 3e-29
>seq21827
Length=6214
Score = 517 bits (572), Expect = 1e-141
Identities = 688/953 (72%), Gaps = 2/953 (0%)
Strand=Plus/Plus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||| ||||||||||| | ||||| || | | || || | | |||
Sbjct 5065 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 5123
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || || ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct 5124 TTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 5183
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
| ||||||||||| ||||||||||| || || || || || | | || | ||
Sbjct 5184 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 5243
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | || || ||||| || |||||||| || | ||||| |||||| | |||
Sbjct 5244 GCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATAC 5303
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
||||| || || || | || |||| | ||||| | | ||| | | ||| |||
Sbjct 5304 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATG 5363
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| || | ||||||||||||| | | || || ||||| |||||||| |||||||||
Sbjct 5364 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 5423
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565
|| || || || | || || | || |||||| | |||||||| | |||||||||
Sbjct 5424 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 5483
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||||| ||||||||||| || || || ||||| |||||||| ||| |||||||||||
Sbjct 5484 TTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAA 5543
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || ||
Sbjct 5544 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 5603
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| || || ||| || ||||| || | || |||||| | | || || ||
Sbjct 5604 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 5663
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || | ||||||| |||||| ||||| ||||| || |||||
Sbjct 5664 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAAT 5723
Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865
|| |||||||| || ||||| ||||| || | |||||||| |||||| |||||| |||
Sbjct 5724 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 5783
Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925
|| | | | ||||||||||| || || | || || || | || ||||| |||||
Sbjct 5784 TCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCT 5843
Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985
| ||| || |||| ||||| || ||| | || |||||||| |||||||| ||||| |
Sbjct 5844 TTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 5903
Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045
|| | ||| || ||| ||| |||| ||||| | |||||||| ||| | |||
Sbjct 5904 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGT 5963
Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098
|||||||||||||| || ||||| ||||| |||||||| || || || |||||
Sbjct 5964 ATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGCTGC 6016
>seq21636
Length=6890
Score = 143 bits (158), Expect = 3e-29
Identities = 219/306 (72%), Gaps = 7/306 (2%)
Strand=Plus/Minus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGTC 19353
||||||||| | || |||||||| || ||| | || |||| | ||| | | ||| ||||
Sbjct 5978 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGTC 5920
Query 19354 GTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTA 19413
| || || | ||||||||| || ||||| || ||||| || ||||| | || || ||||
Sbjct 5919 GAATCCATTTTGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTGTGTCCTA 5860
Query 19414 TCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAG 19471
| ||||||| || || |||||| || | ||| || | |||||| |
Sbjct 5859 TAGATCTACCCGTCGTCGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGCT 5802
Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531
||||| || || || ||| ||||| || || ||||||||||| |||||||| ||
Sbjct 5801 TAATTACAGTATTGATTTCGGAATCTGTATATTTTGTGGTAACTGCGTTGAGTATTGTCC 5742
Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATCAACT 19591
|||||| ||| |||| ||||| |||||||||||| | |||| | ||| | ||| || |
Sbjct 5741 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATGAA-T 5683
Query 19592 TAACTT 19597
||| ||
Sbjct 5682 TAAATT 5677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603297811699200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |