Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq21827 517 1e-141 seq21636 143 3e-29 >seq21827 Length=6214 Score = 517 bits (572), Expect = 1e-141 Identities = 688/953 (72%), Gaps = 2/953 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 5065 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 5123 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 5124 TTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 5183 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 5184 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 5243 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| || | ||||| |||||| | ||| Sbjct 5244 GCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATAC 5303 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | ||||| | | ||| | | ||| ||| Sbjct 5304 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATG 5363 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 5364 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 5423 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||||||| | ||||||||| Sbjct 5424 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 5483 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||| ||||||||||| || || || ||||| |||||||| ||| ||||||||||| Sbjct 5484 TTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAA 5543 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 5544 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 5603 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 5604 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 5663 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || ||||| Sbjct 5664 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAAT 5723 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 5724 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 5783 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||||| || || | || || || | || ||||| ||||| Sbjct 5784 TCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCT 5843 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| || ||| | || |||||||| |||||||| ||||| | Sbjct 5844 TTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 5903 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| | |||||||| ||| | ||| Sbjct 5904 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGT 5963 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 |||||||||||||| || ||||| ||||| |||||||| || || || ||||| Sbjct 5964 ATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGCTGC 6016 >seq21636 Length=6890 Score = 143 bits (158), Expect = 3e-29 Identities = 219/306 (72%), Gaps = 7/306 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGTC 19353 ||||||||| | || |||||||| || ||| | || |||| | ||| | | ||| |||| Sbjct 5978 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGTC 5920 Query 19354 GTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTA 19413 | || || | ||||||||| || ||||| || ||||| || ||||| | || || |||| Sbjct 5919 GAATCCATTTTGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTGTGTCCTA 5860 Query 19414 TCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAG 19471 | ||||||| || || |||||| || | ||| || | |||||| | Sbjct 5859 TAGATCTACCCGTCGTCGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGCT 5802 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 ||||| || || || ||| ||||| || || ||||||||||| |||||||| || Sbjct 5801 TAATTACAGTATTGATTTCGGAATCTGTATATTTTGTGGTAACTGCGTTGAGTATTGTCC 5742 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATCAACT 19591 |||||| ||| |||| ||||| |||||||||||| | |||| | ||| | ||| || | Sbjct 5741 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATGAA-T 5683 Query 19592 TAACTT 19597 ||| || Sbjct 5682 TAAATT 5677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603297811699200