Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq16203 120 3e-22 >seq16203 Length=1080995 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| || ||||| ||||| | || || || ||||| || |||| ||||||||| Sbjct 991401 ATGGCTCTGCCCCCATGCCATGCTCTTTGTCAGTTCTATGTGTGTGATGGTGAGCTGTCC 991460 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| ||||| || || || ||||||||| | || || || ||||| ||||| ||| Sbjct 991461 TGCCAGCTTTATCAGCGCTCTGGTGACATGGGGCTGGGAGTACCTTTCAATATTGCCAGT 991520 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || |||||||||||||| || Sbjct 991521 TATGCACTTCTAACGTACATGATCGCCCA 991549 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||||||| || || || ||||| ||||| ||||| || || || | |||| Sbjct 991549 TGGGCGATCATGTACGTTAGAAGTGCATAACTGGCAATATTGAAAGGTACTCCCAGCCCC 991490 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || ||||| ||||||||||||||||| |||| || ||||| || Sbjct 991489 ATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCACCATCACACACATAGAACTGA 991430 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || || | ||||| ||||| || ||||| Sbjct 991429 CAAAGAGCATGGCATGGGGGCAGAGCCAT 991401 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||||||||||| ||||| || | |||||||| || || | Sbjct 990947 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCCAATGGGTCTCGTGAATTCC 991006 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| || || | ||| |||||||| ||| | || || ||||| || || | Sbjct 991007 TGGACAACAATGGATTTACTAATCGAGAGGAGGGAGACCTTGGGCCTGTCTATGGCTTTC 991066 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||||||||||||||| ||||| Sbjct 991067 AGTGGAGACACTTTGGGGCAGAGTA 991091 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| |||||||||||||||||||| || || ||||| || || | ||| |||||||| Sbjct 991091 TACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCT 991032 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| | || || |||||||| || || |||||||| | || ||||| |||||| Sbjct 991031 CGATTAGTAAATCCATTGTTGTCCAGGAATTCACGAGACCCATTGGCATCCCAAATCTTC 990972 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | |||||||| |||| Sbjct 990971 ACCCCTTTTGCAGAGAGCTCTTTGG 990947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448116378523200