Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4874 176 1e-38 seq10742 158 3e-33 seq18279 89.7 1e-12 >seq4874 Length=535125 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || ||||| |||||||| || || | ||||| | |||||| Sbjct 502242 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502183 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 502182 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502123 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||||| ||||||||| | || ||||| |||||||| ||| Sbjct 502122 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502063 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 502062 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || ||||| |||||||| || || | ||||| | |||||| Sbjct 502470 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502411 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 502410 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502351 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||||| ||||||||| | || ||||| |||||||| ||| Sbjct 502350 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502291 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 502290 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502579 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||||| || |||||| | || ||||| ||||| || ||| Sbjct 502578 TGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTC 502519 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 502518 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 502926 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 502867 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 502866 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502807 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||||| ||||||||| | || ||||| |||||||| ||| Sbjct 502806 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502747 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 502746 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || | || || || |||| |||||||||||||||||||| Sbjct 504551 TTGCCGGCAAAGATCAGTCTCTGCTGAAATGGGGGAATGCCTTCCTTGTCCTGGATCTTG 504492 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || ||||| | ||||||||| |||||||| ||||| || ||| Sbjct 504491 GCTTTAACATTTTCAATCATGTCACTGGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTG 504432 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| | |||||| || Sbjct 504431 AGGGTTTTCACAAAAATCTGCATGTT 504406 >seq10742 Length=3397572 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || ||||| ||||| || || | ||||| | |||||| Sbjct 2148464 AGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 2148523 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || | |||||||||||||| | || || |||||| Sbjct 2148524 TCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGGATACCCTCTTTGTCC 2148583 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || |||||||| ||||||||| ||| ||||| | |||||| ||| Sbjct 2148584 TGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACCTCCAAAGTGATGGTC 2148643 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 2148644 TTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || ||||| || |||||||| || |||||||| || || | || || | ||||| Sbjct 2148919 TAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 2148978 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| |||||||| || || || || || | || ||||||||||| | |||||||| || Sbjct 2148979 TTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATC 2149038 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| ||||||||||| || |||||| ||||| || | |||||| || Sbjct 2149039 CTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGT 2149098 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 2149099 TTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 2149134 >seq18279 Length=91511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||| || ||||||||||| | || |||||| Sbjct 2487 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 2546 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| |||||||||||||| || || | |||||| || Sbjct 2547 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATGTT 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158764966391900