Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 176 1e-38
seq10742 158 3e-33
seq18279 89.7 1e-12
>seq4874
Length=535125
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || || || ||||| |||||||| || || | ||||| | ||||||
Sbjct 502242 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502183
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || | || || || || |||| ||||||||||||
Sbjct 502182 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502123
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||||||||| ||||||||| | || ||||| |||||||| |||
Sbjct 502122 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502063
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 502062 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || || || ||||| |||||||| || || | ||||| | ||||||
Sbjct 502470 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502411
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || | || || || || |||| ||||||||||||
Sbjct 502410 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502351
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||||||||| ||||||||| | || ||||| |||||||| |||
Sbjct 502350 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502291
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 502290 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || | || || || || |||| ||||||||||||
Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502579
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||||||||| || |||||| | || ||||| ||||| || |||
Sbjct 502578 TGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTC 502519
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 502518 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || || ||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 502926 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 502867
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || | || || || || |||| ||||||||||||
Sbjct 502866 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502807
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||||||||| ||||||||| | || ||||| |||||||| |||
Sbjct 502806 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502747
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || ||||| | ||||||
Sbjct 502746 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| || ||||| || | || || || |||| ||||||||||||||||||||
Sbjct 504551 TTGCCGGCAAAGATCAGTCTCTGCTGAAATGGGGGAATGCCTTCCTTGTCCTGGATCTTG 504492
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || ||||| || ||||| | ||||||||| |||||||| ||||| || |||
Sbjct 504491 GCTTTAACATTTTCAATCATGTCACTGGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTG 504432
Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117
|| || || ||||| | |||||| ||
Sbjct 504431 AGGGTTTTCACAAAAATCTGCATGTT 504406
>seq10742
Length=3397572
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||| || ||||| ||||| || || | ||||| | ||||||
Sbjct 2148464 AGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 2148523
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||| || || | |||||||||||||| | || || ||||||
Sbjct 2148524 TCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGGATACCCTCTTTGTCC 2148583
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || |||||||| ||||||||| ||| ||||| | |||||| |||
Sbjct 2148584 TGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACCTCCAAAGTGATGGTC 2148643
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | ||||||
Sbjct 2148644 TTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961
||| || ||||| || |||||||| || |||||||| || || | || || | |||||
Sbjct 2148919 TAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 2148978
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||| |||||||| || || || || || | || ||||||||||| | |||||||| ||
Sbjct 2148979 TTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATC 2149038
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||||||||| ||||||||||| || |||||| ||||| || | |||||| ||
Sbjct 2149039 CTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGT 2149098
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| ||||| | |||||||||
Sbjct 2149099 TTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 2149134
>seq18279
Length=91511
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| ||||| ||||||||||| ||||| || ||||||||||| | || ||||||
Sbjct 2487 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 2546
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| ||||| |||||||||||||| || || | |||||| ||
Sbjct 2547 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATGTT 2593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158764966391900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |