Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 104 2e-17
seq10742 95.1 8e-15
>seq4874
Length=535125
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || || ||||| || || || |||
Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| | || || || ||||| ||||| | || ||||||||
Sbjct 502547 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502606
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || |||||||| || || ||||| | ||||| | ||| ||||||
Sbjct 502607 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502666
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| |||||
Sbjct 502667 ATCCAGAAAGAATCCAC 502683
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || |||||||| || || || |||
Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || || || ||||| ||||| | || ||||||||
Sbjct 502775 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502834
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||||||||| || || ||||| | ||||| | || ||||||
Sbjct 502835 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 502894
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| |||||
Sbjct 502895 ATCCAGAAAGAATCCAC 502911
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||||||||| || ||||| || || || || || || ||
Sbjct 501800 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATTACCCTTGAGGTGGAGCCC 501859
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| |||||| |||| ||| ||||| | || || || || || || | || || ||
Sbjct 501860 AGCGACACTATTGAGAATGTTAAAGC-CAAGATCCAAGATAAGGAGGGCATTCCCCCCGA 501918
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||| | | || ||||| |||||||| || ||||| | ||||| | ||| ||
Sbjct 501919 TCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTA 501978
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || ||||| || ||
Sbjct 501979 CAACATCCAGAAAGAATCTAC 501999
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || |||||||| || || || |||
Sbjct 502031 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502090
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || || || ||||| ||||| | || ||||||||
Sbjct 502091 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502150
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || |||||||| || || ||||| | ||||| | ||| ||||||
Sbjct 502151 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502210
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| || ||
Sbjct 502211 ATCCAGAAAGAATCTAC 502227
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || |||||||| || || || |||
Sbjct 502259 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502318
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || || || ||||| ||||| | || ||||||||
Sbjct 502319 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502378
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || |||||||| || || ||||| | ||||| | ||| ||||||
Sbjct 502379 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502438
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| || ||
Sbjct 502439 ATCCAGAAAGAATCTAC 502455
Score = 86.0 bits (94), Expect = 4e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || ||||||||||| || || || |||||||| || ||||| ||
Sbjct 504406 AACATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAACCC 504465
Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| |||| ||| |||| ||||| | || || ||||| ||||| | || |||
Sbjct 504466 AGTGACATGATTGAAAATGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCATT 504524
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAAC 23755
||| ||| | | || |||||||||||||
Sbjct 504525 TCAGCAGAGACTGATCTTTGCCGGCAAAC 504553
>seq10742
Length=3397572
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || ||||| ||||| || || ||||| |||||| | |||||||| |
Sbjct 2149134 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 2149075
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||||| | || || || || || |||||| | || || ||
Sbjct 2149074 AGTGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGAC 2149015
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || ||||| || || || || ||||| | |||||| | || |||
Sbjct 2149014 CAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTAC 2148955
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 2148954 AACATCCAGAAGGAGTCCAC 2148935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337902246038480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |