Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 136 9e-27
seq10742 122 2e-22
seq20942 84.2 5e-11
>seq4874
Length=535125
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| || |||||||| |||| ||||| |||| | || | |||||
Sbjct 502243 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502184
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 502183 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502124
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||| |||||||| || ||||| || | ||||| ||
Sbjct 502123 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502064
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 502063 CTTCCCAGTGAGGGTTTT 502046
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| || |||||||| |||| ||||| |||| | || | |||||
Sbjct 502471 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502412
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 502411 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502352
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||| |||||||| || ||||| || | ||||| ||
Sbjct 502351 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502292
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 502291 CTTCCCAGTGAGGGTTTT 502274
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||||||||| |||| ||||| |||| | || | |||||
Sbjct 502699 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502640
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 502639 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502580
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||| || ||||| || ||||| || | || || ||
Sbjct 502579 CTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGT 502520
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 502519 CTTCCCAGTGAGGGTTTT 502502
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| ||||||||||| |||| ||||| || | | || | |||||
Sbjct 502927 CAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 502868
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || || || || ||||| |||||||||||
Sbjct 502867 TTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502808
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||| |||||||| || ||||| || | ||||| ||
Sbjct 502807 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502748
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || || | |||||
Sbjct 502747 CTTCCCAGTGAGGGTTTT 502730
Score = 114 bits (126), Expect = 3e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| || |||||||| |||| ||||| |||| | || | |||||
Sbjct 502015 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 501956
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| || ||||| ||||| || | || || ||||| ||||| || ||||| ||
Sbjct 501955 TTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATC 501896
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| || ||| || || ||||| || ||||| || | || || ||
Sbjct 501895 TTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGT 501836
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | ||||| | || | ||||| ||
Sbjct 501835 TTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 501800
>seq10742
Length=3397572
Score = 122 bits (134), Expect = 2e-22
Identities = 143/191 (75%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| ||||| || || |||| ||||| || | | ||| | ||||||
Sbjct 2148692 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148751
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| |||||||| || || | || || || || |||||||| || ||||||
Sbjct 2148752 TCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGAATACCCTCTTTGTCT 2148811
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| || ||| || |||||| || |||||||| | ||| || || || ||||| ||
Sbjct 2148812 TGAAT-TTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACCTCCAAAGTGATGGT 2148870
Query 225681 CTTGCCCGTCA 225691
||| || ||||
Sbjct 2148871 CTTCCCAGTCA 2148881
Score = 118 bits (130), Expect = 3e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| ||||| || || |||| ||||| || | | ||| | ||||||
Sbjct 2148920 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148979
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| ||||| || || || | || ||||| || || ||||||||||| ||
Sbjct 2148980 TCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCC 2149039
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||| || ||||| | || || || || ||||| ||
Sbjct 2149040 TGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTT 2149099
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || |||| || || | || | ||||||||
Sbjct 2149100 TTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 2149134
>seq20942
Length=581221
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536
|| |||||||| || ||||| ||||| || |||||||||||||| |||||||| || ||
Sbjct 458362 TGTCCATCAGTGATGGAGATGACATTAGTTGGGATATAAGCAGACACATCACCAGCCTGG 458303
Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
|| |||| ||||| | ||| || || || || || || || ||
Sbjct 458302 GTCTCGATCACAGGGAGGGCAGTGAGGGAACCGCCTCCGAAGTT 458259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192133021285640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |