Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq21827 664 0.0 seq25415 473 1e-128 >seq21827 Length=6214 Score = 664 bits (736), Expect = 0.0 Identities = 744/989 (75%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| ||||||||| | ||||| || || | || |||||||| | Sbjct 5030 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 5089 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | || ||| | ||||| | Sbjct 5090 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 5148 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || ||||| ||| |||| || || | |||||||||| Sbjct 5149 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 5208 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || |||||||| || ||||| |||| || || || | || || || || | Sbjct 5209 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATTTTTACCCGA 5268 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| || || | ||||| ||| | || || ||||||||||| | || | | Sbjct 5269 TATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 5328 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | ||||| | |||| || || || |||||||||||||||||| | || || Sbjct 5329 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 5388 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| |||||||| |||||||| |||||| ||| || |||||||| ||||| || | Sbjct 5389 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 5448 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || ||||||| | |||||||| ||| ||| |||||||| || || | Sbjct 5449 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 5508 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || || |||| ||| |||| |||||||| |||||||||||||| ||||||| Sbjct 5509 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 5568 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| | || || |||||||| ||||| || || || |||||||| ||||| | Sbjct 5569 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 5628 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| |||| || | | | || | |||||||| || ||| || || | Sbjct 5629 GTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 5687 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||||||||| ||||| |||||||| || || ||||||||||| || ||| Sbjct 5688 GGTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATGGTTATTTT 5747 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| || ||||| ||||||||| | ||||||||||| Sbjct 5748 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTA 5807 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || || ||||| |||||| | ||| ||||||||||||| ||| Sbjct 5808 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTT 5867 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||| | |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 5868 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 5927 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 |||||||| || || ||||||||||| | || |||||||| ||||| || ||||| Sbjct 5928 ACCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCATGAACGTAAC 5987 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGC 184181 ||||| ||||||||||| || || ||||| Sbjct 5988 GCTCATAACTTCCCTCTAGATCTAGCTGC 6016 >seq25415 Length=1491 Score = 473 bits (524), Expect = 1e-128 Identities = 711/1005 (71%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 435 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 436 TTCCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 495 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || || || ||| || | || || ||| | || | | || || ||| Sbjct 496 GGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCCGCA 554 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | || ||| | | |||| ||||| ||||| | Sbjct 555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGCCCTGAAGCA 614 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | || |||| ||| | || || || |||| |||||| || || ||| Sbjct 615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTTCAC 674 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || | || |||||||||||| | || || |||||| | ||| ||| | Sbjct 675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 734 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || || ||||| || || || |||||| |||||| Sbjct 735 T-TACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTGTTTCTGTATT 793 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || ||||| |||||||| || || ||||| || || || Sbjct 794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTGGTGTAGCGGC 853 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 854 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 913 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || || | | || | ||||||||| | || || ||||||| ||| Sbjct 914 TATGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 973 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCC 1033 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || ||||| Sbjct 1034 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 1093 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 1094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 1153 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | ||||| || || || || ||||| ||||| Sbjct 1154 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGAATCTACGTGCCTATGA 1213 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 ||| || |||||| | | ||||| || ||||| || || ||||| ||||| ||||| Sbjct 1214 CTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAA 1273 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || || |||||| | ||||| |||||||| | ||||| || ||||| Sbjct 1274 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 1333 Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| || |||| ||||| || || | || | || |||||||| Sbjct 1334 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621867760567200