Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq21827 672 0.0 seq25415 558 4e-154 >seq21827 Length=6214 Score = 672 bits (744), Expect = 0.0 Identities = 745/988 (75%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 5031 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 5090 Query 163988 ATGATTCCCTGCC-TGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 |||| ||||| || | || | || ||| | ||| || || ||||| ||||| | ||| | Sbjct 5091 ATGA-TCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCC 5148 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | |||||||||| Sbjct 5149 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 5208 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| || || ||| |||| || ||||| | Sbjct 5209 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATTTTTACCCGA 5268 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| || | || |||||| | ||||| |||||||||| | || ||| Sbjct 5269 TATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 5328 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | ||||| | |||| | | ||| ||||||||||||||||||||| || || Sbjct 5329 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 5388 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 5389 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 5448 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || ||||||| | |||||||| || ||||| | |||||||| || | Sbjct 5449 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 5508 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||||| |||| | || ||||| ||||||||||||||||| ||||||| Sbjct 5509 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 5568 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | |||||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 5569 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 5628 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| || | | || ||||| |||||||| || || | | Sbjct 5629 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 5688 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||||||||| ||||| || ||||| ||||| |||| Sbjct 5689 GTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATGGTTATTTTG 5748 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| ||||||||||| ||||| | ||||||||||| | Sbjct 5749 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAG 5808 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || ||||| ||||| |||||| | || ||||||| ||||| || | Sbjct 5809 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTTA 5868 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 || | || |||||||| |||||||| || | | ||| |||| |||||||| | || | Sbjct 5869 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 5928 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 ||||||| || || ||||||||||| |||| |||||||| ||||| || ||||| | Sbjct 5929 CCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCATGAACGTAACG 5988 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGC 164913 |||| ||||||||||| || || ||||| Sbjct 5989 CTCATAACTTCCCTCTAGATCTAGCTGC 6016 >seq25415 Length=1491 Score = 558 bits (618), Expect = 4e-154 Identities = 722/992 (73%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| | Sbjct 393 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 452 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | ||||||||| |||| || || || || || || |||||||| || ||| | Sbjct 453 GCCGTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTA 512 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 || ||||||||| | | ||| ||| ||||| | || || |||||||||||||| || | Sbjct 513 GCAAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAA 571 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | || ||| | || | |||||||| ||||| | ||||| || || | || Sbjct 572 TAGTTTAGCACACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCG 631 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 ||||| ||| | || || || ||||||||||| || || ||||| || || | ||| || Sbjct 632 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTTCACGGCGCTTTCGGACTAAT 691 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 165537 |||||||||| | || || |||||||| || ||| || || | | || ||||| |||| Sbjct 692 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATG 750 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 | || || ||||| ||||| ||||| || || ||| ||| || || || ||||| || | Sbjct 751 CAATCGCATTCTCCGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAG 810 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | || || |||||||| || || || || || || || || || |||||| | | Sbjct 811 GTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTGGTGTAGCGGCTATATTTCGATTCATCC 870 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 |||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || | Sbjct 871 TCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTG 930 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 | | || |||| || |||| | || |||||||||| ||| ||||| |||||||| | Sbjct 931 GGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTAT 990 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| ||||| || ||| || ||| | ||||| | || |||| Sbjct 991 TTGAAGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAA 1050 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 ||||||| |||||||| |||||||| || ||||| || || ||||| ||||||| || Sbjct 1051 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 1110 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 |||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 1111 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 1170 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 || |||| | | ||||| || || ||||| ||||| ||||| || || |||||||| | Sbjct 1171 CTCTTGGAGTAGTCGGTCTAGCCCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAAA 1230 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 | | || || || ||||| || ||||| || ||||| || ||||| || ||| | || | Sbjct 1231 TCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACG 1290 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 |||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||||||| Sbjct 1291 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 1350 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | || || | || | || ||||| |||||| Sbjct 1351 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557472744079200