Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 136 9e-27
seq10742 102 2e-16
>seq4874
Length=535125
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || ||||| ||||| ||||||||||| |||| | || | ||||||
Sbjct 502014 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 501955
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || ||||| ||||||||||| || | | || || ||||| |||
Sbjct 501954 TCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCT 501895
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||| ||| |||| | |||| ||| || ||||| ||||| |||
Sbjct 501894 TGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGTT 501835
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| ||||| || ||||| |||| |||||| ||
Sbjct 501834 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 501800
Score = 118 bits (130), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || ||||| ||||| ||||||||||| |||| | || | ||||||
Sbjct 502242 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502183
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| || | | || |||||||| ||
Sbjct 502182 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502123
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || | || | | |||| ||| ||| || || ||||| ||
Sbjct 502122 TGGATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 502066
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || ||||| |||| ||||||
Sbjct 502065 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 118 bits (130), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || ||||| ||||| ||||||||||| |||| | || | ||||||
Sbjct 502470 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502411
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| || | | || |||||||| ||
Sbjct 502410 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502351
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || | || | | |||| ||| ||| || || ||||| ||
Sbjct 502350 TGGATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 502294
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || ||||| |||| ||||||
Sbjct 502293 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || || ||||| ||||||||||| |||| | || | ||||||
Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| || | | || |||||||| ||
Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502579
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || | || | |||| ||| ||| || || ||||||||
Sbjct 502578 TGGATCTTGGCCTTCACGTTTTCAATAGTGTC---ACTGGGCTCCACCTCCAGAGTAATG 502522
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || ||||| |||| ||||||
Sbjct 502521 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Score = 100 bits (110), Expect = 7e-16
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || ||||| ||||||||||| || | | || | ||||||
Sbjct 502926 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 502867
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| ||||||||||| || | | || |||||||| ||
Sbjct 502866 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502807
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || | || | | |||| ||| ||| || || ||||| ||
Sbjct 502806 TGGATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 502750
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || ||||| |||| ||||||
Sbjct 502749 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
>seq10742
Length=3397572
Score = 102 bits (112), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || || || ||||| || ||||||||||| || | | ||| | ||||||
Sbjct 2148920 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148979
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
||||| || || || || || |||||||||||||| | | ||| |||||||| ||
Sbjct 2148980 TCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCC 2149039
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || | || | |||| ||| ||| ||||| | ||| ||
Sbjct 2149040 TGGATCTTGGCCTTCACGTTTTCAATTGTGTC---ACTCGGCTCAACTTCCAAAGTGATG 2149096
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || || ||||| || |||| |||||||||
Sbjct 2149097 GTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 2149134
Score = 100 bits (110), Expect = 7e-16
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || || || ||||| || ||||||||||| || | | ||| | ||||||
Sbjct 2148692 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148751
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
||||| || || ||||| || ||||||||||| || | | || || || || |||
Sbjct 2148752 TCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGAATACCCTCTTTGTCT 2148811
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|||||||| ||| ||| |||| | | |||| ||| || || || | ||| ||
Sbjct 2148812 TGAATTTTGGCTTTCACATTCTCAATGGTGTC---ACTTGGTTCAACCTCCAAAGTGATG 2148868
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||| || |||| ||||||
Sbjct 2148869 GTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153435546446260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |