Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq22308 150 3e-31 seq988 104 3e-17 >seq22308 Length=220414 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8315 ACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT 8374 |||||| | || ||||| ||| | | || | |||| ||| |||| ||||| Sbjct 57183 ACGTTGTTGCACACTAGCCTCTGCAGCGAGGCCGTGTTGATGATGTCGAAGCCCACCGGG 57124 Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| ||||| ||||||||||| | |||||||||||| |||| ||||||||||| Sbjct 57123 CCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAGCAGATGGCGTTTCCCATGAGGCCT 57064 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || || |||| || | ||| |||| ||||| ||||||| | | | Sbjct 57063 TTGAGGGAGAAGGGGGCACCCATTTCCACCATGGTCTCCCCGAAAATGGCGTCCTGTCTG 57004 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 ||||| || |||| | || | |||||||||||| || || |||| ||| || Sbjct 57003 GGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACGGCATCCACGTGTCCATA 56951 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || |||||||| | ||| || ||| | || || | | || || Sbjct 54366 ATGAGTCTTGTAGTCTGGAATATCCTCTCATCGTCCCAGTGAGGGTGGACCTCCTTTAGT 54307 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | |||||| || | |||||||| || |||||||||||||||||||| Sbjct 54306 ACATCACATACGCGGTTGTGCTCACGCAGCCAGATCGTAGCGTACATCATGAGCCCAGGG 54247 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||||||||| || || || || || || | ||| | || | || | || || Sbjct 54246 ACCAGGCCAAAGGCTTCGTGCCCCACTGCAAACCGCTGGGACTCTGCGACGTGTGGGGGG 54187 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 ||| ||||| ||| ||||| | || | ||||||||||| ||||| | | |||| Sbjct 54186 TAGTGCATGTCCACACCAACGTCCCTCACTGTTGGGGGATACATCTCACCATTCAGCATC 54127 Query 9484 TG 9485 || Sbjct 54126 TG 54125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 9926 GGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTAATAGGAGAGATTGGAG 9985 || ||||||||||| | ||||| || || || ||| | | ||||||| | || || Sbjct 52465 GGTGTTGGACAATCCTCCGGAACAGGGGGGAGTGTCCGGGTGAAATAGGACAAGTTTGAA 52406 Query 9986 AAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGGAGGGCTGTCAATCAAA 10045 | |||||||||||| ||| |||| ||||||||||| | || ||||||||||||| | Sbjct 52405 TAGGCTTCCCAGCTTTTGTACCCGTAATCCGCGTTGTAGGTTGGTGGGCTGTCAATCATA 52346 Query 10046 T 10046 | Sbjct 52345 T 52345 >seq988 Length=132825 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382 ||| ||||| || | |||||| || ||||||| | ||| ||| ||||| || || Sbjct 111260 ACACACTAGTTTTTGCAGAGTTGCACTTTTGACGACCTGGAAGCCCGTCTCTCCTCCAAA 111319 Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442 |||||||||||||||||| |||||||||| | | || ||| | ||||| || || Sbjct 111320 CGTGCTGGGCTTCCAGTACTCCGGGGAGCACAGGGGATTTCCCAGCAAACCTTTCAGAGA 111379 Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGC 8484 ||| ||||| |||| ||| | || ||||| || |||||||| Sbjct 111380 GAAAGGAGCACCCATCTCCACCATACTCTCCCCAAAGATGGC 111421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716643277382400