Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 150 4e-31
seq10742 118 3e-21
seq18279 89.7 1e-12
>seq4874
Length=535125
Score = 150 bits (166), Expect = 4e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| ||||| || || || ||||| || |||||||| || |||
Sbjct 502034 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 502091
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| || ||||| || ||||| |||||||| ||||| || || || || ||||
Sbjct 502092 ACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502151
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| |||||||| | || || |||| || |||
Sbjct 502152 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502211
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| |||||||| || || |||||||| || | || |||
Sbjct 502212 TCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGA 502252
Score = 150 bits (166), Expect = 4e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| ||||| || || || ||||| || |||||||| || |||
Sbjct 502262 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 502319
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| || ||||| || ||||| |||||||| ||||| || || || || ||||
Sbjct 502320 ACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502379
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| |||||||| | || || |||| || |||
Sbjct 502380 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502439
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| |||||||| || || |||||||| || | || |||
Sbjct 502440 TCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGA 502480
Score = 140 bits (154), Expect = 8e-28
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| ||||| || || || || || || |||||||| || |||
Sbjct 502490 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGA--GCCCAGTG 502547
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || || ||||| || ||||| |||||||| ||||| || || || || ||||
Sbjct 502548 ACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502607
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| |||||||| | || || |||| || |||
Sbjct 502608 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502667
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| |||||||| || || ||||||||
Sbjct 502668 TCCAGAAAGAATCCACCCTCCATCTTGT 502695
>seq10742
Length=3397572
Score = 118 bits (130), Expect = 3e-21
Identities = 150/205 (73%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || || ||||| | ||||||||| |||
Sbjct 2148672 CAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGTGAC 2148613
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||| ||||||||||| || |||||||| ||||| ||
Sbjct 2148612 ACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAACAG 2148553
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || || ||||| || || ||||| |||||||| | || || | || || ||| |
Sbjct 2148552 AGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAACATT 2148493
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| ||||| || || || ||||
Sbjct 2148492 CAAAAGGAATCCACCCTCCA-CTTG 2148469
>seq18279
Length=91511
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081
|||||||||||| || ||||| || || ||||||||||| |||||||| || |||||| |
Sbjct 1898 AGGAATCCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGACG 1839
Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||| |||| || ||| |||| ||||
Sbjct 1838 CACTCTGTCCGACTACAACATCCAGAAAG 1810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203329281675640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |