Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4874 150 4e-31 seq10742 118 3e-21 seq18279 89.7 1e-12 >seq4874 Length=535125 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 502034 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 502091 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 502092 ACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502151 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 502152 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502211 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || |||||||| || | || ||| Sbjct 502212 TCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGA 502252 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 502262 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 502319 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 502320 ACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502379 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 502380 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502439 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || |||||||| || | || ||| Sbjct 502440 TCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGA 502480 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || || || || |||||||| || ||| Sbjct 502490 CAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGA--GCCCAGTG 502547 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || ||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 502548 ACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 502607 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 502608 AGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 502667 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || |||||||| Sbjct 502668 TCCAGAAAGAATCCACCCTCCATCTTGT 502695 >seq10742 Length=3397572 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| | ||||||||| ||| Sbjct 2148672 CAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGTGAC 2148613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||| ||||||||||| || |||||||| ||||| || Sbjct 2148612 ACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAACAG 2148553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || || ||||| |||||||| | || || | || || ||| | Sbjct 2148552 AGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAACATT 2148493 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 2148492 CAAAAGGAATCCACCCTCCA-CTTG 2148469 >seq18279 Length=91511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || ||||| || || ||||||||||| |||||||| || |||||| | Sbjct 1898 AGGAATCCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGACG 1839 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||| |||| || ||| |||| |||| Sbjct 1838 CACTCTGTCCGACTACAACATCCAGAAAG 1810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203329281675640