Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 136 4e-27
seq10742 116 3e-21
>seq4874
Length=535125
Score = 136 bits (150), Expect = 4e-27
Identities = 163/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| || ||||| ||||| |||||||||||||||||
Sbjct 502704 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502645
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||||||||| ||||| | ||| || || | ||||| || |||
Sbjct 502644 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502585
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| ||| | | |||||| || | ||||||||||| ||
Sbjct 502584 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGT 502526
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || || || || || ||||||||
Sbjct 502525 AATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || || || ||||| ||||| |||||||||||||||||
Sbjct 502248 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502189
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||||||||| ||||| | ||| || || | ||||| || |||
Sbjct 502188 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502129
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| ||| | | ||||| || | ||||||||||| ||
Sbjct 502128 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502070
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || || || || || ||||||||
Sbjct 502069 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || || || ||||| ||||| |||||||||||||||||
Sbjct 502476 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502417
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||||||||| ||||| | ||| || || | ||||| || |||
Sbjct 502416 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502357
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| ||| | | ||||| || | ||||||||||| ||
Sbjct 502356 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502298
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || || || || || ||||||||
Sbjct 502297 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| ||||| || ||| || ||||| ||||| ||||| |||||||||||
Sbjct 502932 AGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 502873
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || ||||| | ||| || || | ||||| || |||
Sbjct 502872 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502813
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| ||| | | ||||| || | ||||||||||| ||
Sbjct 502812 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502754
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || || || || || ||||||||
Sbjct 502753 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
Score = 118 bits (130), Expect = 1e-21
Identities = 161/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || || || ||||| ||||| |||||||||||||||||
Sbjct 502020 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 501961
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| ||||| || || ||||| | ||| || || | ||||| || ||||
Sbjct 501960 CCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCC 501901
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| | | || | || |||| ||| | | ||||||||| | ||||||||| | ||
Sbjct 501900 TTAT-CTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGT 501842
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| ||||| || || || || || || || |||||||| ||
Sbjct 501841 AATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 501800
>seq10742
Length=3397572
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| || || ||| ||||| |||||||| ||||| ||||||||||| | || ||
Sbjct 2148466 CACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTC 2148525
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
|||||||| || ||||| ||||| | ||||||||| | || | | ||| |||||| |
Sbjct 2148526 AAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGGATACCCTCTTTGTCC-T 2148584
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| | ||||| | ||| | | ||||| || | |||||||||| || || || |
Sbjct 2148585 GGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACCTCCAAAGTGATGGTCT 2148644
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || ||||| ||||| || || ||||||||
Sbjct 2148645 TCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462153404472000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |