Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4874 136 4e-27 seq10742 116 3e-21 >seq4874 Length=535125 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| || ||||| ||||| ||||||||||||||||| Sbjct 502704 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502645 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||||| || ||| Sbjct 502644 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502585 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| | | |||||| || | ||||||||||| || Sbjct 502584 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGT 502526 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 502525 AATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 502248 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502189 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||||| || ||| Sbjct 502188 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502129 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| | | ||||| || | ||||||||||| || Sbjct 502128 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502070 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 502069 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 502476 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 502417 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||||| || ||| Sbjct 502416 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502357 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| | | ||||| || | ||||||||||| || Sbjct 502356 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502298 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 502297 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| || ||||| ||||| ||||| ||||||||||| Sbjct 502932 AGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 502873 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || ||| Sbjct 502872 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 502813 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| | | ||||| || | ||||||||||| || Sbjct 502812 TTGTCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 502754 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 502753 GATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 502020 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 501961 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| || || | ||||| || |||| Sbjct 501960 CCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCC 501901 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || | | || | || |||| ||| | | ||||||||| | ||||||||| | || Sbjct 501900 TTAT-CTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGT 501842 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || || || || || || || |||||||| || Sbjct 501841 AATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 501800 >seq10742 Length=3397572 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| ||||| |||||||| ||||| ||||||||||| | || || Sbjct 2148466 CACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTC 2148525 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| || ||||| ||||| | ||||||||| | || | | ||| |||||| | Sbjct 2148526 AAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGGATACCCTCTTTGTCC-T 2148584 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | ||||| | ||| | | ||||| || | |||||||||| || || || | Sbjct 2148585 GGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACCTCCAAAGTGATGGTCT 2148644 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| ||||| || || |||||||| Sbjct 2148645 TCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462153404472000