Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq72329 102 7e-17 seq4762 102 7e-17 >seq72329 Length=2074 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| || |||| | | || || || || ||||||| |||||||| || || || Sbjct 1053 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 994 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| || || ||||| | |||||| | || || || || || || || || || ||| Sbjct 993 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 934 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | || ||||| || |||||||| | || || | || ||||| || Sbjct 933 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCACATCACTGGACTCAA 878 >seq4762 Length=89736 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| || |||| | | || || || || ||||||| |||||||| || || || Sbjct 82928 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 82869 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| || || ||||| | |||||| | || || || || || || || || || ||| Sbjct 82868 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 82809 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | || ||||| || |||||||| | || || | || ||||| || Sbjct 82808 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCACATCACTGGACTCAA 82753 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| || |||| | | || || || || ||||||| |||||||| || || || Sbjct 87261 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 87202 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| || || ||||| | |||||| | || || || || || || || || || ||| Sbjct 87201 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 87142 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | || ||||| || |||||||| | || || | || ||||| || Sbjct 87141 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCACATCACTGGACTCAA 87086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399148288754565