Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19305 113 5e-20 seq9986 105 8e-18 seq10215 84.2 3e-11 >seq19305 Length=42216 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||||| ||||| || |||||||| ||||| || || ||| |||||||| | ||| || Sbjct 25503 CACTCTCTTCATGAACAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTG 25562 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 |||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| || Sbjct 25563 TTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGG 25622 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | |||| || Sbjct 25623 CTCCAGGTACATGGCAAAAGCTCCTGG 25649 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 22453 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 22512 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 22513 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATGGTCT 22572 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 22573 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTTAGGTCATCTGG 22621 >seq9986 Length=217236 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACG 86598 Query 24277 C 24277 | Sbjct 86597 C 86597 >seq10215 Length=77808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| ||| || || |||||||| ||||| || | || | ||| ||||| ||||||||| Sbjct 35543 ATATTCACCTCCTCGACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTCCAGATG 35602 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATC 24717 || |||||||||| || ||||| ||||||| Sbjct 35603 TCTGGATATTGAATAGGGAAAATGACAAATC 35633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593179406013360