Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq72329 140 4e-28 seq4762 140 4e-28 >seq72329 Length=2074 Score = 140 bits (154), Expect = 4e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| |||||| | ||||||||| || || | ||||||||| |||||||| Sbjct 877 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 936 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||| ||||| || ||||| || |||||||||||||||||||| || | ||| ||| | Sbjct 937 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 996 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | ||| || |||||||| | |||||||| |||| ||||| Sbjct 997 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 1041 >seq4762 Length=89736 Score = 140 bits (154), Expect = 4e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| |||||| | ||||||||| || || | ||||||||| |||||||| Sbjct 82752 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 82811 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||| ||||| || ||||| || |||||||||||||||||||| || | ||| ||| | Sbjct 82812 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 82871 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | ||| || |||||||| | |||||||| |||| ||||| Sbjct 82872 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 82916 Score = 140 bits (154), Expect = 4e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| |||||| | ||||||||| || || | ||||||||| |||||||| Sbjct 87085 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 87144 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||| ||||| || ||||| || |||||||||||||||||||| || | ||| ||| | Sbjct 87145 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 87204 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | ||| || |||||||| | |||||||| |||| ||||| Sbjct 87205 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 87249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589537934490280