Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2134 147 2e-30 seq23339 102 8e-17 seq10215 86.0 6e-12 >seq2134 Length=159448 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 26896 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26837 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 26836 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 26778 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 26777 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 26718 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| ||||| | ||||| || Sbjct 26717 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTGCGCCTCAGGGGTGG 26670 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 27124 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27065 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 27064 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 27006 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 27005 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 26946 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 26945 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 26898 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 27352 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27293 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 27292 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 27234 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 27233 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 27174 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 27173 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27126 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 27580 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27521 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 27520 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 27462 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 27461 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 27402 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 27401 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27354 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 27808 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27749 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 27748 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 27690 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 27689 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 27630 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 27629 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27582 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 28036 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27977 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 27976 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 27918 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 27917 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 27858 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 27857 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27810 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 28264 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28205 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 28204 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 28146 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 28145 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 28086 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 28085 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28038 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 28492 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28433 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 28432 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 28374 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 28373 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 28314 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 28313 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28266 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 28720 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28661 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 28660 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 28602 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 28601 GCAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAA 28542 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 28541 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28494 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || ||||| || ||||| |||||||| | || || || | Sbjct 28952 AAAGATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCC 28893 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||||| | | | | |||||| || || | ||||| || ||||| || | || Sbjct 28892 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGA 28833 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| || |||||| |||| || | ||||| || |||||| Sbjct 28832 CCAGCAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTA 28773 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 28772 CAACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28722 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || || ||| | Sbjct 26668 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 26609 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | ||||| Sbjct 26608 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCA 26550 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || |||||| |||| || | ||||| || ||||||||| Sbjct 26549 GCAGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAA 26490 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| | ||| | ||||| || Sbjct 26489 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 26442 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| | || || ||| | | | Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 26380 GACACCATTGAGAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 26322 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||||||| |||| || | ||||| || ||||||||| Sbjct 26321 GCAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 26262 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || ||||| || |||| Sbjct 26261 CATCCAGAAGGAGTCCACCCTCCATCTTGTTCTGCG 26226 >seq23339 Length=10106 Score = 102 bits (112), Expect = 8e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| ||| || | |||||||| ||||| ||| | |||||||| | | |||| | Sbjct 3274 TCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTG 3333 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | |||||||||||||| || | ||||| || |||||||||||| ||||| ||| ||| Sbjct 3334 CTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAACATTCAGAAAGAGTCCA 3393 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | |||| || ||| |||| Sbjct 3394 CCTTGCACCTGGTGCTGCG 3412 >seq10215 Length=77808 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 116818 TCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAA 116877 ||| ||||||||| | | ||||| || | ||||||||||||||||||| ||| ||||| Sbjct 34761 TCAAGAGGTGCAGCTCCCGGAGGCTCGATCCTTCTACGGCTTTCAGATCCTCATCGAGAA 34702 Query 116878 CGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| |||||||| | |||||| |||| ||| Sbjct 34701 TGTGCACTCCGAAATGTACAGCATGCTCATCAACACCTAC 34662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | ||||||||| || || || |||||||| || ||||| || ||| Sbjct 35661 GAGCCCCTCCTCAGAGAGAACCCCAAACGATTTGTCATTTTCCCTATTCAATATCCAGAC 35602 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| | || | || || |||||||| |||||||||||| Sbjct 35601 ATCTGGAAAATGTACAAACAAGCTCAAGCTTCATTCTGGACAGTCGAGGAGGTG 35548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514748695386320