Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq72329 91.5 1e-13 seq4762 91.5 1e-13 >seq72329 Length=2074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||||| ||||| ||||| | || | ||| | ||||| |||||||| || ||||| | Sbjct 885 CAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACAC 944 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | || || || ||| | || | || || | ||| || || | || || || |||||| Sbjct 945 CCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACAT 1004 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||| | || |||| ||||||||||| ||||| ||| | |||| Sbjct 1005 AAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATCT 1054 >seq4762 Length=89736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||||| ||||| ||||| | || | ||| | ||||| |||||||| || ||||| | Sbjct 82760 CAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACAC 82819 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | || || || ||| | || | || || | ||| || || | || || || |||||| Sbjct 82820 CCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACAT 82879 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||| | || |||| ||||||||||| ||||| ||| | |||| Sbjct 82880 AAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATCT 82929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||||| ||||| ||||| | || | ||| | ||||| |||||||| || ||||| | Sbjct 87093 CAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACAC 87152 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | || || || ||| | || | || || | ||| || || | || || || |||||| Sbjct 87153 CCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACAT 87212 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||| | || |||| ||||||||||| ||||| ||| | |||| Sbjct 87213 AAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATCT 87262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346475229703490