Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2134 127 2e-24 seq23339 82.4 7e-11 >seq2134 Length=159448 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 28739 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 28798 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 28799 CAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 28858 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | || | || || Sbjct 28859 GATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTT 28918 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || |||||||||||||| Sbjct 28919 GCCAGTCAGCGTCTTCACAAAAATCTGCAT 28948 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| Sbjct 26684 CAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATC 26743 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 26744 TTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 26803 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 || || || || | || | |||||| | || | || ||||| | || | | Sbjct 26804 CTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGG 26862 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| |||| || ||||| || |||||||| Sbjct 26863 TCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 26974 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 26975 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27034 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 27035 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 27093 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 27094 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27202 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 27203 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27262 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 27263 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 27321 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 27322 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27430 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 27431 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27490 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 27491 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 27549 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 27550 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27658 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 27659 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27718 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 27719 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 27777 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 27778 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27886 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 27887 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27946 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 27947 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 28005 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 28006 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28114 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 28115 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28174 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 28175 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 28233 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 28234 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28342 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 28343 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28402 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 28403 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 28461 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 28462 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28570 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 28571 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28630 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | || | Sbjct 28631 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGT-TCCACCTCAAGAGTGATGGTCT 28689 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || ||||| || |||||||| Sbjct 28690 TGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 26518 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| ||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 26519 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTG 26578 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | || | || || Sbjct 26579 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 26638 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || ||||| || |||||||| Sbjct 26639 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| ||||||||||| ||| || ||||| ||| Sbjct 3410 CAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATC 3351 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| |||| | | |||||| || || || ||||| || ||||| Sbjct 3350 TTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433444125139444