Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2134 118 1e-21 seq18430 98.7 1e-15 seq12008 96.9 4e-15 seq7618 91.5 2e-13 seq2569 91.5 2e-13 >seq2134 Length=159448 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 28739 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 28798 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| ||||||||||| || || ||||||||||| | || | || |||||||| Sbjct 28799 CAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 28858 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| || | | |||||||| | || || || | |||||||| || Sbjct 28859 GATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTT 28918 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGC 43191 ||| || |||||||| ||||| || ||||| ||||||| Sbjct 28919 GCCAGTCAGCGTCTTCACAAAAATCTGCATCTTTACGC 28956 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||| | ||| |||||| || || ||||| || | ||| || || | Sbjct 26682 CGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCA 26741 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||| || |||||||| || || ||||||||||| | || | || |||||| Sbjct 26742 TCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 26801 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | |||||||| | |||||| || | |||||| Sbjct 26802 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATG 26861 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || | |||||||| ||||| ||||| Sbjct 26862 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 26974 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 26975 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27034 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 27035 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27094 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 27095 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27202 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 27203 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27262 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 27263 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27322 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 27323 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27430 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 27431 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27490 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 27491 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27550 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 27551 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27658 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 27659 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27718 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 27719 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27778 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 27779 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27886 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 27887 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27946 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 27947 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28006 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 28007 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28114 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 28115 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28174 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 28175 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28234 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 28235 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28342 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 28343 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28402 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 28403 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28462 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 28463 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28570 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || |||||||| || || ||||||||||| | || | || ||||||||| Sbjct 28571 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28630 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | |||||| || | |||||||| || Sbjct 28631 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28690 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 28691 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||| | ||| |||||| || || ||||| || | |||||| || | Sbjct 26225 ACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACC 26284 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||| || |||||||| || | ||||||||||| | || | || ||||| Sbjct 26285 ATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTT 26344 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | |||||||| | |||||| || | ||||| Sbjct 26345 GTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGAT 26404 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | |||||||| ||||| ||||| Sbjct 26405 GGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 26518 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| |||||||| || || || ||||||||||| | || | || ||||||||| Sbjct 26519 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTG 26578 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| || | | |||||||| | || || || | |||||||| || Sbjct 26579 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 26638 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| ||||| Sbjct 26639 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq18430 Length=72259 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| | Sbjct 15046 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTC 15105 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 15106 CACTATACTAACGAGGA 15122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| || Sbjct 15312 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 15253 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 15252 ACTATACTAACGAGGA 15237 >seq12008 Length=131271 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 66358 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 66417 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 66418 ATACTAACGAGGA 66430 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 60057 AAAAATTT-----TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 67067 AAAAATTTGTGCATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 67126 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 67127 GATACTTACCACTATACTAACGAGGA 67152 >seq7618 Length=81477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 62857 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 62916 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 62917 ATACTAACGAGGA 62929 >seq2569 Length=241589 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 117970 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 118029 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 118030 TACTAACGAGGACTG 118044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 122564 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 122505 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 122504 TACTAACGAGGACTG 122490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571295409019960