Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq812 246 2e-60 seq17917 208 5e-49 >seq812 Length=157481 Score = 246 bits (272), Expect = 2e-60 Identities = 590/887 (67%), Gaps = 13/887 (1%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 28313 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATGGTGATCCATAAGAAGATT 28254 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 28253 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 28194 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | ||||| | Sbjct 28193 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGTCTG 28134 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || || || ||||| |||| Sbjct 28133 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATCTACGCTTCGTGGTCTCGAGTT 28074 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 28073 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 28014 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || |||||||| || ||||| | | | || Sbjct 28013 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCTGAAATGGTTCAGACTCTA 27954 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || |||| || ||||||||| ||||||| |||| || ||||| ||||| Sbjct 27953 AAACAACTGAACGGAAAGAACAGTTTGGAGTCAGAGG---CTGTAGAGTCTAAAAAGGTG 27897 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170 |||||| | || | | | || || | || | ||| || | ||| | | Sbjct 27896 CGCTGGGAGTATCATCACAATGTTACGAATGGTGTGATTCGGACCGACATTA-GAAAGTC 27838 Query 108171 CCTCCCCCTGATAATTTA----CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 |||| | |||| | ||||||||| |||| ||||| || ||||||| || | Sbjct 27837 ---ACCCCCGCCAATTCAGAGCCCCATGTTCTCAGGAAATGCTTACTTTGTGGTTTCAAG 27781 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGTCA 108285 || ||||| | | |||| | || | | | | |||| | | ||||||| | Sbjct 27780 AGAGTTTGTGGATTACATCTT-TAAAAGCAAAGACACTCAAGATTTCATGGAATGGGAGA 27722 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 ||||||| || || || || || ||| | ||||| || | ||||| || | | | Sbjct 27721 AAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCGGATGCCTTCAGTAC 27662 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | || || ||| ||| ||||| | || ||||||| || || || | | Sbjct 27661 CGGGATCAAACCCTGCACACAGAAAGTACGAGCAATCGGACATGAACGCAATTGCTCGTC 27602 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | || |||||| ||||| || |||||| | | | ||||| || || |||| ||| Sbjct 27601 TAGTGAAGTGGAGCTACCATGAAGGAGATATAAAAAGTGGGGCTCCCTACCCACCATGCA 27542 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 |||| | | | |||| | || ||||| || || |||||| || | |||||| | Sbjct 27541 CTGGGAAGTACAGACGGGCGGTGTGTATTTATGGAGCTGGGGACTTGAAATGGATTGTGA 27482 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 || | ||||| || ||||||||||||||||| || || |||||| Sbjct 27481 AGCAACATCATCTTTTGGCAAACAAGTTTGATCCAGAAGTAGATGAT 27435 Score = 242 bits (268), Expect = 3e-59 Identities = 593/890 (67%), Gaps = 19/890 (2%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 23562 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATGGTGATCCATAAGAAGATT 23503 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 23502 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 23443 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | ||||| | Sbjct 23442 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGTCTG 23383 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || ||||| ||||| |||| Sbjct 23382 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATCTACGCCTCGTGGTCTCGAGTT 23323 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 23322 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 23263 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || |||||||| || ||||| | | | || Sbjct 23262 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCTGAAATGGTTCAGACTCTA 23203 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || |||| || ||||||||| ||||||| |||| || ||||| ||||| Sbjct 23202 AAACAACTGAACGGAAAGAACAGTTTGGAGTCAGAGG---CTGTAGAGTCTAAAAAGGTG 23146 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170 |||||| | || | | | || || | || | ||| | | ||| | | Sbjct 23145 CGCTGGGAGTATCATCACAATGTTACGAATGGTGTGATTCGGACCGACGTTA-GAAAGTC 23087 Query 108171 CCTCCCCCTGATAATTTA----CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 |||| | |||| | || |||||| |||| ||||| || ||||||| || | Sbjct 23086 ---ACCCCCGCCAATTCAGAGCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTTTCAAG 23030 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGTCA 108285 || ||||| | | |||| | || | | | | |||| | | ||||||| | Sbjct 23029 AGAGTTTGTGGATTACATCTT-TAAAAGCAAAGACACTCAAGATTTCATGGAATGGGAGA 22971 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 ||||||| || || || || || ||| | ||||| || | ||||| || | | | Sbjct 22970 AAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCGGATGCCTTCAGTAC 22911 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | || || ||| ||| ||||| || || ||||||| || || || | | Sbjct 22910 CGGGATCAAACCCTGCACACAGAAAGTACGACCAATCGGACATGAACGCAATTGCTCGTC 22851 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | || ||||||| ||||| || |||||| | | | ||||| || || |||| ||| Sbjct 22850 TAGTAAAGTGGCGCTACCATGAAGGAGATATAAAAAGTGGGGCTCCCTACCCACCATGCA 22791 Query 108466 CTGG--AATCCA-TCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 |||| | | || ||| ||| | || ||||| || || |||||| || | |||||| Sbjct 22790 CTGGGAAGTACAGACGGGGGG---TGTGTATTTATGGAGCTGGGGACTTGAAATGGATTG 22734 Query 108523 TCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 | | ||||| || ||||||||||||||||| || | || |||||| Sbjct 22733 TGATACAACATCATCTTTTGGCAAACAAGTTTGATCCAAAAGTAGATGAT 22684 Score = 221 bits (244), Expect = 8e-53 Identities = 588/889 (66%), Gaps = 17/889 (2%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 19535 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATT 19476 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 19475 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 19416 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | ||||| | Sbjct 19415 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGTCTG 19356 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || || || ||||| |||| Sbjct 19355 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATCTACGCTTCGTGGTCTCGAGTT 19296 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 19295 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 19236 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || |||||||| || ||||| | | | || Sbjct 19235 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCTGAAATGGTTCAGACTCTA 19176 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || |||| || ||||||||| ||||||| |||| || ||||| ||||| Sbjct 19175 AAACAACTGAACGGAAAGAACAGTTTGGAGTCAGAGG---CTGTAGAGTCTAAAAAGGCA 19119 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCT--ACCAGCAAGATGAAGG 108168 |||||| | || | | | || || || || ||| | ||| | | ||| | Sbjct 19118 CGCTGGGAGTATCATCACAATGTTAC-GA-ACTGTGTGATTTGGACCGACGTTA-GAAAG 19062 Query 108169 ACCCTCCCCCTGATAATTTA----CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 | |||| | |||| | || |||||| |||| ||||| || ||||||| || Sbjct 19061 TC---ACCCCCGCCAATTCAGAGCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTTTCA 19005 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGT 108283 ||| ||||| | | |||| | || | | | | |||| | | ||||||| Sbjct 19004 AGAGAGTTTGTGGATTACATCTT-TAAAAGCAAAGAGACTCAAGATTTCATGGAATGGGA 18946 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 |||||||| || || || || || ||| | ||||| || | ||||| || | | Sbjct 18945 GAAAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCGGATGCCTTCAGT 18886 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 || || || ||| || ||||| || || ||||||| || || || | Sbjct 18885 ACCGGGATCAAACCCTCCGAACAGAAAGTACGACCAATCGGACATGAACGCAATTGCTCG 18826 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || || |||||| | || || |||||| | | | ||||| || || |||| || Sbjct 18825 ACTAGTGAAGTGGAGCTCCCTTGAAGGAGATCTAAAAAGTGGGGCTCCCTACCCACCATG 18766 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | |||| | | | ||| | || ||||| || || |||||| || | ||| || | Sbjct 18765 CACTGGGACGTACAGACGGGAGGTGTGTATTTATGGAGCTGGGGACTTGAAATGGGTTGT 18706 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 || | || || || ||||||||||||||||| || || |||||| Sbjct 18705 GAAGCAACACCATCTTTTGGCAAACAAGTTTGATCCAGAAGTAGATGAT 18657 Score = 206 bits (228), Expect = 2e-48 Identities = 284/397 (72%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 31166 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATT 31107 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 31106 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 31047 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | ||||| | Sbjct 31046 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGTCTG 30987 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || || || ||||| |||| Sbjct 30986 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATCTACGCTTCGTGGTCTCGAGTT 30927 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 30926 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 30867 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || |||||||| || ||||| | | | || Sbjct 30866 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCTGAAATGGTTCAGACTCTA 30807 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG 108087 || |||| || ||||||||| ||||||| |||| Sbjct 30806 AAACAACTGAACGGAAAGAACAGTTTGGAGTCAGAGG 30770 >seq17917 Length=155789 Score = 208 bits (230), Expect = 5e-49 Identities = 297/416 (71%), Gaps = 3/416 (1%) Strand=Plus/Plus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 109915 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATT 109974 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 109975 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 110034 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | ||||| | Sbjct 110035 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGTCTG 110094 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 ||||||| || ||||||| || ||| ||| | || ||||||||||| |||| Sbjct 110095 ACCAATGTGTTTGTGGCCAGCAAACTGGAGAACGTGATCTACGCCTCCTGGTCTCGAGTT 110154 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 110155 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 110214 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || || ||||| || ||||| | | | Sbjct 110215 CTTAACACCTGTGGCACTGATTTCCCCATTAAAACAAATGCTGAAATGGTTCAGATTTTA 110274 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 || || | || ||||||||| ||||||| ||||| | | ||||||||||| Sbjct 110275 AAACAACTGCACGGAAAGAACAGTTTGGAGTCCGAGGT-CGT--AGAGTCCAAAAA 110327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347958707664018