Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2134 111 1e-19 seq23339 86.0 5e-12 >seq2134 Length=159448 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| ||| |||| | || |||| Sbjct 26233 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCCA 26292 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||| || ||||| ||||| ||||| ||||| ||||| | || ||||||||| | Sbjct 26293 ACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGA 26352 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | |||||||| | || || ||||||| Sbjct 26353 TCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGC 26412 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| ||||| || ||||| ||||| Sbjct 26413 CAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 26688 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 26747 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 26748 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 26807 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 26808 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 26867 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 26868 CCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 26916 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 26975 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 26976 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 27035 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 27036 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 27095 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 27096 CCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 27144 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 27203 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 27204 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 27263 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 27264 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 27323 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 27324 CCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 27372 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 27431 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 27432 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 27491 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 27492 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 27551 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 27552 CCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 27600 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 27659 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 27660 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 27719 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 27720 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 27779 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 27780 CCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 27828 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 27887 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 27888 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 27947 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 27948 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 28007 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 28008 CCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 28056 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 28115 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 28116 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 28175 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 28176 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 28235 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 28236 CCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 28284 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 28343 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 28344 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 28403 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 28404 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 28463 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 28464 CCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 28512 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCC 28571 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| Sbjct 28572 AACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 28631 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| | || || |||||| Sbjct 28632 ATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTG 28691 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 28692 CCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 28740 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCC 28799 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| |||| ||||| ||||| ||||| | || |||||||| Sbjct 28800 AACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 28859 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 28860 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTG 28919 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| ||||||||||| || ||||| || Sbjct 28920 CCAGTCAGCGTCTTCACAAAAATCTGCATCTT 28951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 26460 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCC 26519 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || |||| ||||| ||||| || || | || ||||||||| Sbjct 26520 AACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGG 26579 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 26580 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTG 26639 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 26640 CCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| |||||||||||||||||| |||| ||| | || ||| Sbjct 3406 ACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCC 3347 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| || || || ||||||| ||| ||||| || || | || || |||||| Sbjct 3346 AGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 3290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394723432079197