Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2134 129 5e-25 seq19305 104 2e-17 seq10215 84.2 2e-11 >seq2134 Length=159448 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 26896 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26837 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 26836 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26777 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 26776 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26717 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 26716 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTGCGCCTCAGGGGTGGTA 26668 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 27124 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27065 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 27064 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27005 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 27004 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26945 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 26944 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 26896 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 27352 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27293 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 27292 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27233 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 27232 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27173 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 27172 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 27124 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 27580 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27521 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 27520 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27461 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 27460 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27401 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 27400 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 27352 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 27808 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27749 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 27748 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27689 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 27688 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27629 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 27628 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 27580 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 28036 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27977 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 27976 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27917 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 27916 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27857 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 27856 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 27808 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 28264 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28205 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 28204 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28145 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 28144 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28085 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 28084 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 28036 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 28492 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28433 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 28432 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28373 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 28372 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28313 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 28312 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 28264 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 28720 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28661 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 28660 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28601 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||||||||||||||| | || || ||| || ||| Sbjct 28600 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28541 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || |||||||| || | || ||||| |||| Sbjct 28540 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 28492 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| ||||| || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 28952 AAAGATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCC 28893 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | ||||| | || |||||||||||| | || || || Sbjct 28892 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGA 28833 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||||||||| || |||||||| |||||||||||||| | | | || || ||| | Sbjct 28832 CCAGCAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGA-TGGACGCACGCTGTCCGACT 28774 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || |||||||| || | || ||||| |||| Sbjct 28773 ACAACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 28720 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || ||||| || | Sbjct 26668 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 26609 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 26608 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAG 26549 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || ||||| |||||||||||||| | | | || || ||| || || Sbjct 26548 CAGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGA-TGGACGCACGCTGTCCGACTACAA 26490 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || |||||||| || | || ||||| |||| Sbjct 26489 CATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGGTA 26440 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||| || ||||| | || || ||||| | Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 26380 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26321 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||||||||||||||| | ||| || ||| || ||| Sbjct 26320 CAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAC 26261 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || ||||| || || Sbjct 26260 ATCCAGAAGGAGTCCACCCTCCATCTTGTTCT 26229 >seq19305 Length=42216 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||| || || || || | || || | || || ||||||| || |||| Sbjct 24642 GTGTACTCTACTATCTCTGTGCACAAGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGG 24701 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || |||||||| | ||||||||| |||||||| || ||||| ||||| ||| Sbjct 24702 TTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGA 24761 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| ||||| || |||||| Sbjct 24762 GACTCAATGATGGCATGCCACA 24783 >seq10215 Length=77808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 |||||| ||| |||||||||| || || ||| ||||||||||||| ||||| ||||| Sbjct 35647 AGAGAACCCCAAACGATTTGTCATTTTCCCTATTCAATATCCAGACATCTGGAAAATGTA 35588 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||| | || |||| || || ||||| ||||| || || Sbjct 35587 CAAACAAGCTCAAGCTTCATTCTGGACAGTCGAGGAGGT 35549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445359320551440