Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19305 116 5e-21 seq9986 111 2e-19 seq10215 84.2 3e-11 >seq19305 Length=42216 Score = 116 bits (128), Expect = 5e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 ||||| ||||| || |||||||| ||||| || || ||| |||||||| | ||| || Sbjct 25503 CACTCTCTTCATGAACAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTG 25562 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 |||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| || Sbjct 25563 TTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGG 25622 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | |||| || Sbjct 25623 CTCCAGGTACATGGCAAAAGCTCCTGG 25649 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 22453 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 22512 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 22513 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATGGTCT 22572 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 22573 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTTAGGTCATCTGG 22621 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| ||||| || |||| || | ||| || | ||| || ||| |||| Sbjct 23849 TAGGTTTCATACGGTCCAAATTTTGCAGCCAGCTCACAGCTGGACTCCAAGGCAGCGTAG 23908 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || ||||| |||||||||| | || ||| ||| || || | ||| || || || | Sbjct 23909 TAGATGGTCTCAAAGATCTGTGTGTTGAGAAGTTGAGCCTCTGCGCTCTCGAAGGGGAAG 23968 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | |||||| || ||||| || | || ||||||||||| ||||| || || || | | Sbjct 23969 CGCATGAGAATGAAGGCGTCGGCCAGACCCTGAACACCAATGCCGATGGGCCTGTGACGC 24028 Query 62808 TTATTAGAGATTTCAGC 62824 || || ||| | || || Sbjct 24029 TTGTTGGAGTTCTCTGC 24045 >seq9986 Length=217236 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || |||||||| ||||| || || | ||| | Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || ||||||||||||||||| ||||||||||| | Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACG 86598 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 86597 CCACCACTCTCTCCCC 86582 >seq10215 Length=77808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 |||| ||| || || |||||||| ||||| || | || | ||| ||||| ||||||||| Sbjct 35543 ATATTCACCTCCTCGACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTCCAGATG 35602 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATC 34164 || ||||||| || |||||||| ||||||| Sbjct 35603 TCTGGATATTGAATAGGGAAAATGACAAATC 35633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629242442694960