Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq72329 95.1 1e-14 seq4762 95.1 1e-14 >seq72329 Length=2074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| || |||| || || || || ||||||||||| ||||| || || Sbjct 881 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 940 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || || ||||| | || | ||||||||||||||| |||| ||| || | | Sbjct 941 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 1000 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || |||||||| || || | || || || || | |||||| Sbjct 1001 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 1042 >seq4762 Length=89736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| || |||| || || || || ||||||||||| ||||| || || Sbjct 82756 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 82815 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || || ||||| | || | ||||||||||||||| |||| ||| || | | Sbjct 82816 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 82875 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || |||||||| || || | || || || || | |||||| Sbjct 82876 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 82917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| || |||| || || || || ||||||||||| ||||| || || Sbjct 87089 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 87148 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || || ||||| | || | ||||||||||||||| |||| ||| || | | Sbjct 87149 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 87208 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || |||||||| || || | || || || || | |||||| Sbjct 87209 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 87250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427395115869360