Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2134 127 2e-24 seq23339 93.3 4e-14 >seq2134 Length=159448 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| | ||||||||| Sbjct 26472 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAACTGTTTACC 26530 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||||||| ||||| || || || |||||||| ||||| ||| || || Sbjct 26531 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 26590 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| ||||||| ||||||| || | |||||||| ||||| || Sbjct 26591 GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGT 26650 Query 139747 TTTTACGAATATTTGCATA 139765 |||||||| || |||||| Sbjct 26651 CTTTACGAAGATCTGCATA 26669 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| | ||||||||| Sbjct 28752 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAACTGTTTACC 28810 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||||||| ||||| || ||||| |||||||| ||||| ||| || || Sbjct 28811 AGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 28870 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| ||||||| ||||||| || | |||||||| |||| ||| Sbjct 28871 GACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGT 28930 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 28931 CTTCACAAAAATCTGCAT 28948 >seq23339 Length=10106 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| |||||||| || ||| | Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| |||||||| |||||| |||||| | ||||| || || || Sbjct 3364 AGTGTGCGTCCA-TCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 3306 Query 139657 TATGCCTTCTTTGTC 139671 |||||||||||||| Sbjct 3305 AATGCCTTCTTTGTC 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495610988154400