Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9986 96.9 3e-15 >seq9986 Length=217236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || || ||||| || || || || | ||| ||||| | ||||| || | Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||| || || | ||| || || || |||||||| ||||| || ||||||||||||| Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACG 86598 Query 13802 C 13802 | Sbjct 86597 C 86597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||||||| | | ||| |||||||||||||| |||||||| || || ||||| Sbjct 85088 ATGTAGGTATCAATTAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGCAATCTGG 85029 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAA 14035 |||||||| || || | ||||||| | ||| || ||| ||||||| Sbjct 85028 AAACCATAGAAGCAACGGGCTTCTGTCACTTGGACTTCCTGAGTAAA 84982 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||||||| | | ||| |||||||||||||| |||||||| || || ||||| Sbjct 85963 ATGTAGGTATCAATTAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGCAATCTGG 85904 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAA 14035 |||||||| || || | ||||||| | ||| || ||| ||||||| Sbjct 85903 AAACCATAGAAGCAACGGGCTTCTGTCACTTGGACTTCCTGAGTAAA 85857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478151746725480