Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2134 114 9e-21 >seq2134 Length=159448 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || || || |||||||| ||| ||| | | | ||||| Sbjct 26231 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTC 26290 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||||||||| | |||||||| || ||||| ||||| ||||| ||||| Sbjct 26291 CAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 26350 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || ||||| ||||| ||| || || | || ||||| || Sbjct 26351 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 26410 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || ||||| || || |||||| Sbjct 26411 GCCAGTCAAGGTCTTTACGAAGATCTGCATA 26441 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 26693 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 26752 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 26753 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 26812 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 26813 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 26872 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 26873 CAAGGTCTTTACGAAGATCTGCATA 26897 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 26921 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 26980 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 26981 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27040 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 27041 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27100 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 27101 CAAGGTCTTTACGAAGATCTGCATA 27125 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 27149 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27208 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 27209 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27268 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 27269 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27328 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 27329 CAAGGTCTTTACGAAGATCTGCATA 27353 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 27377 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27436 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 27437 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27496 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 27497 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27556 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 27557 CAAGGTCTTTACGAAGATCTGCATA 27581 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 27605 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27664 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 27665 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27724 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 27725 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27784 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 27785 CAAGGTCTTTACGAAGATCTGCATA 27809 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 27833 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27892 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 27893 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27952 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 27953 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28012 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 28013 CAAGGTCTTTACGAAGATCTGCATA 28037 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 28061 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28120 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 28121 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28180 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 28181 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28240 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 28241 CAAGGTCTTTACGAAGATCTGCATA 28265 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 28289 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28348 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 28349 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28408 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 28409 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28468 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 28469 CAAGGTCTTTACGAAGATCTGCATA 28493 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||| || || Sbjct 28517 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28576 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 28577 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28636 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| | || ||||| ||||| ||| || || | || ||||| || || || Sbjct 28637 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28696 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||| Sbjct 28697 CAAGGTCTTTACGAAGATCTGCATA 28721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361856722091637